PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D02478.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 440aa MW: 48343.8 Da PI: 6.7421

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D02478.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	242	289	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Migut.D02478.1.p 242 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 289 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-17	236	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-9	236	293	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-16	238	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	242	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	244	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MPSSAVSAAA SEAFILRELI GKLGGGGIGS SIAFPATATP FSGAHNTTPP PPPPPPLHSL 60 SGDPGFAERA AKFSCFGSRS FNGRTAAFEM MNDGGGGRSA TPPADMHMHR VSSSPCLNPP 120 AAAEKKKISL IRQQPQVEYN NNSNEESSVS DQIPSGETLS KNSNELNSSR KRKSLSRTKD 180 RSINPSNNKR TKDHQNKDDE DDEEEDKGDE KSKEKTTEDQ KPPEPPKDYI HVRARRGQAT 240 DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKALMLDE IINYVQSLQR QVEFLSMKLS 300 SVNPGLDFSM ENLLLSKDNM VQQNTSVPQQ MYPLDSSSPP LFHQNVQQLQ NNNNISNNNN 360 NNNNSTISVE PIIHIDHATL CRNLGIQLPC LDRFTHDILP QFPGFSEDDL QSIVQMGFAQ 420 NPANFSTVQN QTSNMKVER*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MPSSAVSAAA SEAFILRELI GKLGGGGIGS SIAFPATATP FSGAHNTTPP PPPPPPLHSL  60
SGDPGFAERA AKFSCFGSRS FNGRTAAFEM MNDGGGGRSA TPPADMHMHR VSSSPCLNPP  120
AAAEKKKISL IRQQPQVEYN NNSNEESSVS DQIPSGETLS KNSNELNSSR KRKSLSRTKD  180
RSINPSNNKR TKDHQNKDDE DDEEEDKGDE KSKEKTTEDQ KPPEPPKDYI HVRARRGQAT  240
DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKALMLDE IINYVQSLQR QVEFLSMKLS  300
SVNPGLDFSM ENLLLSKDNM VQQNTSVPQQ MYPLDSSSPP LFHQNVQQLQ NNNNISNNNN  360
NNNNSTISVE PIIHIDHATL CRNLGIQLPC LDRFTHDILP QFPGFSEDDL QSIVQMGFAQ  420
NPANFSTVQN QTSNMKVER*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	SRKRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D02478.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835220.1	0.0	PREDICTED: transcription factor bHLH78 isoform X1
Swissprot	Q9SRT2	3e-95	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2G9GX75	1e-141	A0A2G9GX75_9LAMI; Uncharacterized protein
STRING	Migut.D02478.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-75	bHLH family protein

Link Out ? help Back to Top
Phytozome	Migut.D02478.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]