PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D02379.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

YABBY

Protein Properties

Length: 161aa MW: 17807.2 Da PI: 10.394

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D02379.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.8	1.6e-55	4	138	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppv 115 vsvP+ s+f++vtvrCGhC++llsvn+ q + ++ ++++ v+e n ++ ++++ ++ + ++d+e p+ pp Migut.D02379.1.p 4 QVSVPYGSMFNIVTVRCGHCANLLSVNMGALLQSVQLQDF--------QKQQSLVAEANNNKDSGSSSKCNRFGP----LLHTDHEQPKLPP- 83 69*********************999887776666553........222222222222222222222222222....3577888999999. PP YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 irPPekrqrvPsaynrfikeeiqrikasnP+i+hreafs+aaknWahfP+ihfgl Migut.D02379.1.p 84 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEITHREAFSTAAKNWAHFPHIHFGL 138 9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.2E-59	4	138	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	82	131	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.6E-5	87	130	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGVQVSVPYG SMFNIVTVRC GHCANLLSVN MGALLQSVQL QDFQKQQSLV AEANNNKDSG 60 SSSKCNRFGP LLHTDHEQPK LPPIRPPEKR QRVPSAYNRF IKEEIQRIKA SNPEITHREA 120 FSTAAKNWAH FPHIHFGLKL DGNKQAKVSG EAATKKSNSF *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D02379.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851072.1	1e-118	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	8e-64	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A022QHK0	1e-107	A0A022QHK0_ERYGU; Uncharacterized protein
STRING	Migut.D02379.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-66	YABBY family protein

Link Out ? help Back to Top
Phytozome	Migut.D02379.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]