PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02326.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 541aa MW: 61883 Da PI: 5.7034 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.4 | 1.2e-09 | 84 | 116 | 2 | 34 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfv 34 fYn+YA++vGFs+r+s+s++s+++g i++r fv Migut.D02326.2.p 84 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFV 116 9******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-7 | 84 | 116 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-29 | 257 | 349 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MENGVIEFDI GLSGGDDGID IETPNDDGEE MGGASPNDAN SIGSGSGGDA TSSFSLHTYL 60 PDGDIDLEPY EGMEFESEES AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVYSGK 120 WVVSGFVREH NHELVPPDQV HCLRSHRQIS GPAKTLIDTL QAAGMGPRRI MSVLVKEYGG 180 ISKVGFTEVD CRNYMRNNRQ RNMEGDIQLL LDYLKQKQSE NPSFFYAIQG DEDQYTGNVF 240 WADPKSRSDY NHFGDTVTFD TTYRSNRYRL PFVPFTGLNH HGQPVLFGCA FLINESEASF 300 VWLFKTWLSA MFGRSPLSIT TEHDSVIRSA IMQVLPNTRH RFCKWHMFKQ CQEKLSHVLL 360 QHPQFEAAFQ KCVNLSESAE EFESSWHLLL DKYELVDHSW LQSIYADRRQ WVPVYLRDTF 420 FAEMSVTYMN SYFDGYVNAS TNLNQFFKLY EKALESRHEK EVKADFDTMN TSPVLKTPSP 480 MEKQASEFYT RKLFTRFQEE LVSTLTFTAS KVDDNGEVTT YRVAKFGEEH KFYHMSNNVS 540 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02326.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837945.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G9G6P2 | 0.0 | A0A2G9G6P2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02326.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02326.2.p |
Publications ? help Back to Top | |||
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