PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02326.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 723aa MW: 82423.4 Da PI: 6.016 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30 | 1.8e-09 | 84 | 116 | 2 | 34 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfv 34 fYn+YA++vGFs+r+s+s++s+++g i++r fv Migut.D02326.1.p 84 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFV 116 9******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.6E-7 | 84 | 116 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.6E-29 | 257 | 349 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.608 | 507 | 550 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.0E-9 | 524 | 548 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.1E-10 | 525 | 552 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MENGVIEFDI GLSGGDDGID IETPNDDGEE MGGASPNDAN SIGSGSGGDA TSSFSLHTYL 60 PDGDIDLEPY EGMEFESEES AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVYSGK 120 WVVSGFVREH NHELVPPDQV HCLRSHRQIS GPAKTLIDTL QAAGMGPRRI MSVLVKEYGG 180 ISKVGFTEVD CRNYMRNNRQ RNMEGDIQLL LDYLKQKQSE NPSFFYAIQG DEDQYTGNVF 240 WADPKSRSDY NHFGDTVTFD TTYRSNRYRL PFVPFTGLNH HGQPVLFGCA FLINESEASF 300 VWLFKTWLSA MFGRSPLSIT TEHDSVIRSA IMQVLPNTRH RFCKWHMFKQ CQEKLSHVLL 360 QHPQFEAAFQ KCVNLSESAE EFESSWHLLL DKYELVDHSW LQSIYADRRQ WVPVYLRDTF 420 FAEMSVTYMN SYFDGYVNAS TNLNQFFKLY EKALESRHEK EVKADFDTMN TSPVLKTPSP 480 MEKQASEFYT RKLFTRFQEE LVSTLTFTAS KVDDNGEVTT YRMRASCSCR MFEFSGLLCR 540 HVLAVFRVTN VLTLPSYYIS KRWTRNAKSS VVLEERAVDP FNGYLESHTV RYNTLRHEAF 600 KFVDEGAESV ESYNVAMAVL MEASNKVACV VKNEGKASVN NGPMRNKSSY CRSEGEGSST 660 QQLSEADMDQ KINELSMDLE SANRKCEVYR TNLLSLLKDI EDHKQRLSIE VQNIKLSMKD 720 GL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02326.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837945.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G9G6P2 | 0.0 | A0A2G9G6P2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02326.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02326.1.p |
Publications ? help Back to Top | |||
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