PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02267.1.p
Common NameMIMGU_mgv1a011255mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 289aa    MW: 32648.7 Da    PI: 7.2616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02267.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-1360102246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g ++ eEd+++  + +  G++ W+ Ia  ++ gRt++++k++w++
  Migut.D02267.1.p  60 GEFSDEEDKIICSLYANIGSR-WSIIAGQLP-GRTDNDIKNHWNT 102
                       789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.0893653IPR017877Myb-like domain
SuperFamilySSF466891.5E-2239108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-123965IPR009057Homeodomain-like
PROSITE profilePS5129422.17154108IPR017930Myb domain
SMARTSM007173.5E-1158106IPR001005SANT/Myb domain
PfamPF002491.6E-1160102IPR001005SANT/Myb domain
CDDcd001678.38E-861102No hitNo description
Gene3DG3DSA:1.10.10.605.6E-1966105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKNLLSLSLS LSLSLSLSLS LSLIFVHQFD LLVLILGLKR CGKSCRLRWL NYLRPNIKHG  60
EFSDEEDKII CSLYANIGSR WSIIAGQLPG RTDNDIKNHW NTKLKKKLFA KFSPPFSQSH  120
SLSTLYTSFY THATKSLTDI SSNTSSSQNY LNSQPPFFLT NQFPNYYQQN QGFQYNNQPV  180
KDSNMLVFGG VNNESAAASC SSDGSCSQIS YGGHEDNNQK FMLQYYGKNI VNGDPILDHH  240
HQKLTNGVVE NSGLEYDLEE VKQMIITNDS LLFGDENKFV DERGVFYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-194010837105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-194010837105C-Myb DNA-Binding Domain
1msf_C1e-194010837105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02267.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827710.10.0PREDICTED: transcription factor RAX2-like, partial
TrEMBLA0A022PR260.0A0A022PR26_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.15e-43myb domain protein 87