PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02231.1.p | ||||||||
Common Name | MIMGU_mgv1a021154mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 615aa MW: 67240.2 Da PI: 7.6081 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.5 | 1.2e-23 | 110 | 211 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + Migut.D02231.1.p 110 FAKTLTQSDANNGGGFSVPRFCAETIfppldytADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 198 89*********************999****998666666..699**********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++++ l+v+++r+ Migut.D02231.1.p 199 SENGDLCVGIRRA 211 478889****996 PP | |||||||
2 | Auxin_resp | 110.4 | 1.8e-36 | 273 | 353 | 4 | 83 |
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++++FevvY+Prast+eF+vk+++v++a++v++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWpnS+Wr+L+ Migut.D02231.1.p 273 MAANGQAFEVVYYPRASTPEFCVKASSVNSAMRVQWFSGMRFKMPFETEDSSRISWfMGTIANVQVVDPLRWPNSPWRMLQ 353 6899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-37 | 103 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-29 | 107 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-21 | 109 | 210 | No hit | No description |
Pfam | PF02362 | 4.5E-22 | 110 | 211 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-22 | 110 | 212 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.056 | 110 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.0E-32 | 273 | 353 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MEKSLDSELW HACAGGMVQM PPVNSKVFYF PQGHAEHTLT TVDFGALPKI PPMILCRVIA 60 VKFLADAETD EVHAKIRLIP VGKNEHGFDD NGRDLGIAGS AASGEKPTSF AKTLTQSDAN 120 NGGGFSVPRF CAETIFPPLD YTADPPVQNV IAKDVHGETW KFRHIYRGTP RRHLLTTGWS 180 TFVNQKKLVA GDSIVFLRSE NGDLCVGIRR AKRGGSGGGQ DSSSSSGWNS GGAGNFGFSP 240 FLKEDEIHRG VCNGNLREKG KIRPESVVEA TFMAANGQAF EVVYYPRAST PEFCVKASSV 300 NSAMRVQWFS GMRFKMPFET EDSSRISWFM GTIANVQVVD PLRWPNSPWR MLQVTWDEPD 360 LLQNVKCVSP WLVEMVSNMP IHLSPFSPPR KKLRLPHHTD FQLDGQFQMP SFSGNPLGPS 420 SPLCCLSDNI LTAGIQGARH AQIGVPFSDL HLSNNKLHMG LFPPSFMHLD SRPRIPHSTN 480 VGSGNENISC LLSMGNSSQK SDKPDGPKKP RFVLFGQPIL TEQQMSSELS SKVGQGKNSL 540 DLSSAQFLRK PGYHSSEIGL DTGHCKVFLD SEDVGRTLDL SFLGSYEEKL ITGLPTAERG 600 LDSSNQTGPL SIYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-84 | 5 | 374 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02231.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827715.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A022PX46 | 0.0 | A0A022PX46_ERYGU; Auxin response factor (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02231.1.p |
Publications ? help Back to Top | |||
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