PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02129.1.p | ||||||||
Common Name | LOC105949069, MIMGU_mgv1a014387mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 22060.9 Da PI: 10.1786 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 30 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++Tt E++l +++++++G++ W++Iar+++ gRt++++k++w++++ Migut.D02129.1.p 30 RGKMTTHEEKLVLELHNKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 75 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.379 | 1 | 24 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.43E-21 | 10 | 83 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-9 | 10 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.304 | 25 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 29 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 30 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.77E-11 | 32 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 38 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MFYVVVAGLK RTGKSCRLRW VNYLHPGLKR GKMTTHEEKL VLELHNKWGN RWSRIARKIP 60 GRTDNEIKNY WRTHMRKKAQ DQKKTKRMIS PSLSSSSSSS FSNSSTSSIS NNSRPNAGPT 120 VDSSSRANTA GEKEEEISTK VYSMDEIWKD IELSEESSNF KCQEMISHTW DMLMQPIGDD 180 NFHSLPFYNH I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-17 | 2 | 79 | 27 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-17 | 2 | 79 | 81 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-17 | 2 | 79 | 81 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-17 | 2 | 79 | 27 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-17 | 2 | 79 | 27 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02129.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059395 | 6e-40 | KF059395.1 Salvia miltiorrhiza MYB-related transcription factor (MYB41) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827789.1 | 1e-141 | PREDICTED: transcription factor MYB48 | ||||
Swissprot | Q4JL84 | 3e-49 | MYB59_ARATH; Transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 4e-49 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A022PVX0 | 1e-140 | A0A022PVX0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-48 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02129.1.p |
Entrez Gene | 105949069 |
Publications ? help Back to Top | |||
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