PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02079.1.p | ||||||||
Common Name | LOC105949155, MIMGU_mgv1a002337mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 688aa MW: 78081.8 Da PI: 4.8449 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 342.2 | 8.7e-105 | 312 | 684 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+ v+s+d + a + L++++e+as++gd qRla++f+ +L+arl ++++ely++l+ ++ + +e+l+a++++ ++P+ k Migut.D02079.1.p 312 LRTLLISCAQSVASDDRRTAYEQLKQINEHASSTGDVYQRLASVFAIGLQARLGGTGTELYASLTRRKIT---AAEKLKAYQVYLSACPFKKA 401 6789*********************************************************999999998...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s aNq+I +++++++Hi+Df+i +G+QWp L+q L++R + p +lRiTg++ p++g +e++eetg rLak++e++gvpfe++v++++ Migut.D02079.1.p 402 SIGFANQMIGLVASEATTLHIVDFGILYGFQWPVLIQHLSERGGVPLKLRITGIEFPQPGfrPTERVEETGIRLAKYCERFGVPFEYQVIATQ 494 ******************************************99999************9******************************999 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 ++e+++++++++++gE+laVn+ ++ +llde+v+++ +rd+ L+l++s++P+++v + ++n++ F++rf eal +ysalfd+++a+++ Migut.D02079.1.p 495 NWESIKIDDFKIRKGEVLAVNCLFRFGTLLDETVTVDRsPRDACLNLIRSMKPDIFVNAVVSGSYNAPFFVTRFREALFHYSALFDMFDATIS 587 ***********************************9988****************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r++ +r+ E+ + gre+ nv++ceg+er+er et+++W+ r ++aGF+p+pl+++ +k+ ++ +++ +++ + e+ +++++gWk+r + + Migut.D02079.1.p 588 RDNPQRMDFEQDFYGREVINVISCEGSERVERPETYKQWQVRHMRAGFEPMPLNNELMKKLRHKVKNGYNKDFLFGEDGNWMLQGWKGRIICA 680 *********************************************************************999********************* PP GRAS 370 vSaW 373 S+W Migut.D02079.1.p 681 SSCW 684 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.408 | 286 | 665 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-102 | 312 | 684 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MDPRFNIHNT SNGFNFDDEN FDKFSPDYEQ SQNHTNGIIH DYLELNVMDY PDSFALSSTT 60 SYETESPDDQ DSDPVLKFLN QILIEENMEE KSSMFHDPLA LIATEKSLYE VLGQQYPPSP 120 RHPLNYDNAP SFDSFFRSSP EYTNSSNAIG FGENNFSGQN LFTDADSIMQ FKKGMEEANK 180 FLPTVNPLII DLDKYELPPK SDDITPSVIV KVEKEKDETE DSPKGLKGKI RKHHDPDEDD 240 SLDMERSSKQ SAIYVEDVEL SEMFDRVLLC TDTKGKPVSC TGDSDAKLLP TESNGAKSRT 300 KKNETQQDSV DLRTLLISCA QSVASDDRRT AYEQLKQINE HASSTGDVYQ RLASVFAIGL 360 QARLGGTGTE LYASLTRRKI TAAEKLKAYQ VYLSACPFKK ASIGFANQMI GLVASEATTL 420 HIVDFGILYG FQWPVLIQHL SERGGVPLKL RITGIEFPQP GFRPTERVEE TGIRLAKYCE 480 RFGVPFEYQV IATQNWESIK IDDFKIRKGE VLAVNCLFRF GTLLDETVTV DRSPRDACLN 540 LIRSMKPDIF VNAVVSGSYN APFFVTRFRE ALFHYSALFD MFDATISRDN PQRMDFEQDF 600 YGREVINVIS CEGSERVERP ETYKQWQVRH MRAGFEPMPL NNELMKKLRH KVKNGYNKDF 660 LFGEDGNWML QGWKGRIICA SSCWVPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-45 | 316 | 642 | 8 | 330 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02079.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827889.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A022PU05 | 0.0 | A0A022PU05_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D02079.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02079.1.p |
Entrez Gene | 105949155 |
Publications ? help Back to Top | |||
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