PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.D01811.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 422aa MW: 45875 Da PI: 6.0195 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.8e-39 | 150 | 209 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Migut.D01811.1.p 150 PDKILPCPRCSSMETKFCYYNNYNVSQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 209 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 147 | 207 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-32 | 152 | 208 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.668 | 154 | 208 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 156 | 192 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 422 aa Download sequence Send to blast |
MEASDDSTYT TSVLNIGRGG RKYCTILVKR FEKTVFGRVE YNERDFQEGN DCVAGEQRIC 60 RRRRSSDESN SGSGGVGGGA VVDSDGGGGE AGEVGRSDAE DQLPETKEPR NCHNESDENP 120 ETPSINEDDP KAENEQPDPT DGQQKTLKKP DKILPCPRCS SMETKFCYYN NYNVSQPRHF 180 CKSCQRYWTA GGTMRNVPVG AGRRKNKNSA PHCHLITISD NALKPNPAIL SFGPDPPAFE 240 PGLDTSEKRV ACGSNNAPDV PVNNMNGFPY PVHCIPGVPW PYPVPLPTLC PPGYPIPFYP 300 PAPYWGWNMP WVSGDQTGPT SPLGKHSRNG ELINPKVSEK GSESNSIVIP KTLRIDDPEE 360 AAKSSIWETL GIKYNSVNRE GLFKALQPKS GGEKEIRVSA SAAMQANPAA LSRSITFQEG 420 A* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:19619493, ECO:0000269|PubMed:22628657}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.D01811.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation at the protein level, but not at the mRNA level. Strongly decreased expression during the dark phase. Accumulates at high levels at the beginning of the day. {ECO:0000269|PubMed:16002617}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852921.1 | 0.0 | PREDICTED: cyclic dof factor 1-like | ||||
Swissprot | Q8W1E3 | 1e-73 | CDF1_ARATH; Cyclic dof factor 1 | ||||
TrEMBL | A0A022Q8P7 | 1e-167 | A0A022Q8P7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D01811.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-55 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.D01811.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|