PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01642.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 26789.8 Da PI: 9.4063 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.1 | 5e-16 | 11 | 99 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+v+ ++++ l lp +++ ++k +sk +l++ s +W++ + r++ g + +++GW +Fv+++ L gDfvvF+++g +f+++v+v Migut.D01642.1.p 11 FTVM--VPGFQTH-LNLPSAVCKKLKEK--KSKRAILKS-SIGKWKIDV-CRNNEGLICFENGWPQFVNDHCLSIGDFVVFEHTG--DFNFNVSV 96 5555..4456666.99******988766..666788777.5568*****.35555559************************655..8888**** PP E-S CS B3 97 frk 99 f++ Migut.D01642.1.p 97 FDH 99 *97 PP | |||||||
2 | B3 | 52.1 | 1.2e-16 | 131 | 216 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 f+ +++ps + ++ r+ +p+ f++++++ ++ tl+d++ r W vkl ++++r+++ +GW +F +n+Lk+gD++ F+l+ g Migut.D01642.1.p 131 FVLTMKPSFARRQPRVNIPRVFVRSNSLGDKS--SATLRDPHKRAWPVKLVLeANGRSRVLMCRGWHDFYVSNELKDGDICRFELNlG 216 67788899999999************555445..599*************8867777779999*********************8744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.152 | 7 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-20 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.08E-10 | 9 | 98 | No hit | No description |
SuperFamily | SSF101936 | 5.1E-18 | 9 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.2E-16 | 10 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-13 | 10 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-22 | 125 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-23 | 125 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-18 | 129 | 213 | No hit | No description |
PROSITE profile | PS50863 | 13.775 | 131 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-12 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 131 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEGEIISTHF FTVMVPGFQT HLNLPSAVCK KLKEKKSKRA ILKSSIGKWK IDVCRNNEGL 60 ICFENGWPQF VNDHCLSIGD FVVFEHTGDF NFNVSVFDHT ACEKELSIES KKERRENNKG 120 ELDHNSQTPH FVLTMKPSFA RRQPRVNIPR VFVRSNSLGD KSSATLRDPH KRAWPVKLVL 180 EANGRSRVLM CRGWHDFYVS NELKDGDICR FELNLGSLQT KNAVMDVQIS RALV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01642.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853809.1 | 1e-115 | PREDICTED: B3 domain-containing protein REM8-like | ||||
TrEMBL | A0A022Q6M2 | 1e-163 | A0A022Q6M2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01642.1.p |