PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01640.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 186aa MW: 21350.2 Da PI: 7.3474 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.7 | 1.5e-11 | 20 | 57 | 60 | 99 |
EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++GW +Fv+++gL gDfvvF+++g +f+++v+vf++ Migut.D01640.1.p 20 SFENGWPQFVRDHGLSIGDFVVFEHTG--NFHFNVSVFDH 57 5789********************766..7777****997 PP | |||||||
2 | B3 | 45 | 2e-14 | 82 | 166 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+ +++ps +++++r+ +p +fa+++++ ++ +tl+d++ r W +l + ++ r v+ kGW F +n+Lk gD++ F+l+ Migut.D01640.1.p 82 FVLTMKPSFAHEKARVNIPAEFARSNNLCDKS--SVTLRDPRKRPWPEELGLqKIGPFRLVMWKGWHAFYVSNQLKNGDICRFELNP 166 778999999*****************777555..5************999664777777*************************873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.391 | 1 | 58 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.61E-13 | 16 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-8 | 20 | 57 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-12 | 20 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.28E-9 | 21 | 56 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 75 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-20 | 76 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-14 | 80 | 182 | No hit | No description |
Pfam | PF02362 | 3.7E-12 | 82 | 167 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0038 | 82 | 184 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.337 | 82 | 184 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEGEIISRHF FNVIAPGLIS FENGWPQFVR DHGLSIGDFV VFEHTGNFHF NVSVFDHTAC 60 EKEFPFEPKN ERHENNTRNP HFVLTMKPSF AHEKARVNIP AEFARSNNLC DKSSVTLRDP 120 RKRPWPEELG LQKIGPFRLV MWKGWHAFYV SNQLKNGDIC RFELNPDSLQ SATALMDVHI 180 SRASV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01640.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853809.1 | 1e-128 | PREDICTED: B3 domain-containing protein REM8-like | ||||
TrEMBL | A0A022Q8Q3 | 1e-123 | A0A022Q8Q3_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01640.1.p |