PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01639.1.p
Common NameMIMGU_mgv11b019660mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 242aa    MW: 27908.7 Da    PI: 9.0088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01639.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-16191001299
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++ l lp +f+e+ + +  +sk  +l+++ g +W++ +  ++++++ + +++GW +Fv+++gL   DfvvF+++g  +f++++++f++
  Migut.D01639.1.p  19 FHNHLNLPSSFCEKLKDE--NSKRAILKSRIG-KWKIDV--CRNGEGiIRFENGWPQFVRDHGLSIEDFVVFEHTG--DFHFNISIFDH 100
                       35569*******999755..677888888666.7*****..66666669************************765..78889**9997 PP
2B362.38e-20138225189
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       ff +++ps +lk+  + +p +f+++ ++++++   +tl+d++gr+W vkl+  +k++ r  + +GW +F  +n+Lk gD++vF+l+++s 
  Migut.D01639.1.p 138 FFLTMKPSFALKTPGVHIPVEFVRSVNLSQKS--SITLMDPQGREWPVKLRLqTKSRLRARMYSGWHDFYVSNELKNGDVCVFELNSTSP 225
                       889999*******9************999656..6***************997777778*************************987533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.358101IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-1710103IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-131099No hitNo description
Gene3DG3DSA:2.40.330.101.1E-1910103IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1511101IPR003340B3 DNA binding domain
PfamPF023621.1E-1319100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-24132239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-22133224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.33E-18136238No hitNo description
PfamPF023627.3E-18138225IPR003340B3 DNA binding domain
SMARTSM010194.5E-11138235IPR003340B3 DNA binding domain
PROSITE profilePS5086314.974138240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEGEVAISGH FFNVMVRGFH NHLNLPSSFC EKLKDENSKR AILKSRIGKW KIDVCRNGEG  60
IIRFENGWPQ FVRDHGLSIE DFVVFEHTGD FHFNISIFDH TACEKEFPVE SKKEHQENSK  120
RESDKANVTF YHTRNPHFFL TMKPSFALKT PGVHIPVEFV RSVNLSQKSS ITLMDPQGRE  180
WPVKLRLQTK SRLRARMYSG WHDFYVSNEL KNGDVCVFEL NSTSPRCTTA LFNVQISRAT  240
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01639.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853810.11e-148PREDICTED: B3 domain-containing protein REM9-like
TrEMBLA0A022QAR51e-180A0A022QAR5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-23B3 family protein