PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01611.2.p | ||||||||
Common Name | LOC105973494, MIMGU_mgv1a004008mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 542aa MW: 59496.8 Da PI: 6.7115 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.8 | 8.4e-18 | 256 | 305 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lre++P++ +K +Ka+ L ++++YI+ Lq Migut.D01611.2.p 256 RSKHSATEQRRRSKINDRFQKLREIIPNS----EQKRDKASFLLEVIDYIQFLQ 305 889*************************8....7*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-23 | 251 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-19 | 254 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.244 | 254 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-15 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.57E-15 | 256 | 308 | No hit | No description |
SMART | SM00353 | 1.9E-12 | 260 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MELPQPRPIG TEGRKATHDF LSLYSSTPPA HAQQDPAPPQ GGYLKTHDFL QPLEQVGKNV 60 MSKEENKVGM NATERPPLPA PSPPASVEHL LPGGIGTYSI SYFNQRVLKP DGSLFTAQAI 120 NTTANDENSN CSSYTGGGFT LWDESAVKKG KTGKENISAE RHILQEAGVN NVAGGQWTSF 180 LEKPSQSSSN HKTFSSFSSS QPSSSQKNQS FMDMITSAKN DQEEDDDDEE DEFVIKKEPS 240 SHTKAKTADQ KPNTPRSKHS ATEQRRRSKI NDRFQKLREI IPNSEQKRDK ASFLLEVIDY 300 IQFLQEKVNR CESSYNVWNH EPSKMMQWQR NCQIAEGLLD PRGANADNNV PASVSAATKF 360 DEKKACLSPM NAQNLLVDSD NISSATTFKE RSHHRLQPES NKSKAVVQPN IFNFGTSSNT 420 AVSPKQASSL DKTITWPPLP ERNRTKDQEP TIESGTINIS SVYSQGLLNT LTQALQSSGL 480 DLSQASISVQ IDLGKRANDI PHSSTLLAKD DDDDIPGALT RSRAAGAGEE FGHALKRLRT 540 S* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01611.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853977.1 | 0.0 | PREDICTED: transcription factor BIM1 isoform X2 | ||||
TrEMBL | A0A022Q4M7 | 0.0 | A0A022Q4M7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D01611.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-107 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01611.2.p |
Entrez Gene | 105973494 |