PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01314.1.p
Common NameMIMGU_mgv1a025190mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 150aa    MW: 16804.4 Da    PI: 10.3074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01314.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689e-222573149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie ks  qvtfskRr+g++ KA+E+SvLC+ae+a+++ s+ +k+y y
  Migut.D01314.1.p 25 KKIEKKSSLQVTFSKRRTGLFRKASEISVLCGAEIAILVQSPANKIYSY 73
                      68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.311777IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-321776IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-271787IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-201939IPR002100Transcription factor, MADS-box
PfamPF003191.1E-222673IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-203954IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-205475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MENINNKELT ICKKKTMGRR KIEIKKIEKK SSLQVTFSKR RTGLFRKASE ISVLCGAEIA  60
ILVQSPANKI YSYGHPSVET LLHRYQTGGG GGGGAALNII PYMEDGRDKY DEAVRKLEIV  120
KRSVKQESSI SSTRFWWDEP MEGHGTLRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-151785169Myocyte-specific enhancer factor 2B
1tqe_Q1e-151785169Myocyte-specific enhancer factor 2B
1tqe_R1e-151785169Myocyte-specific enhancer factor 2B
1tqe_S1e-151785169Myocyte-specific enhancer factor 2B
5f28_A1e-151785169MEF2C
5f28_B1e-151785169MEF2C
5f28_C1e-151785169MEF2C
5f28_D1e-151785169MEF2C
6c9l_A1e-151785169Myocyte-specific enhancer factor 2B
6c9l_B1e-151785169Myocyte-specific enhancer factor 2B
6c9l_C1e-151785169Myocyte-specific enhancer factor 2B
6c9l_D1e-151785169Myocyte-specific enhancer factor 2B
6c9l_E1e-151785169Myocyte-specific enhancer factor 2B
6c9l_F1e-151785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01314.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833835.12e-94PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A022RKW51e-106A0A022RKW5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-23AGAMOUS-like 62