PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.D01312.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26357.8 Da PI: 5.5142 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.7 | 2.1e-20 | 23 | 71 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ks qvtfskRr g++ KA+ELSvLC+ae+a+++ s+ +k++ y Migut.D01312.1.p 23 KKIEKKSSLQVTFSKRRIGLFRKASELSVLCGAEIAILVQSPANKIFSY 71 68*******************************************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-31 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.904 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-25 | 15 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-22 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MENNKELTIC KKKTMGRRKI EIKKIEKKSS LQVTFSKRRI GLFRKASELS VLCGAEIAIL 60 VQSPANKIFS YGHPSVETLI HRHQTGGGGG GSSAASSIIP YKEDGRSKYD EAVKKLEIVK 120 RSMKQESSSS SNTRFWWDEP LDGMELYELE EYAEAMEALK DNVSRRVEEM EKQKSNAASA 180 STSDLDRSFQ INYQDFDGCK SELEEMLIKA EAGVLDIDEL FNFTQDPTIF FDL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-15 | 15 | 99 | 1 | 85 | MEF2C |
5f28_B | 6e-15 | 15 | 99 | 1 | 85 | MEF2C |
5f28_C | 6e-15 | 15 | 99 | 1 | 85 | MEF2C |
5f28_D | 6e-15 | 15 | 99 | 1 | 85 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.D01312.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833839.1 | 1e-172 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A022RN47 | 1e-160 | A0A022RN47_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13821 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-23 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.D01312.1.p |