PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D01232.1.p

Common Name

MIMGU_mgv1a021462mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GRAS

Protein Properties

Length: 508aa MW: 56029.6 Da PI: 6.3497

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D01232.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.4	6e-114	133	506	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs...elykalppsetsekn..sseelaalklfsevs 88 lv+lL++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++La rla ++ y +pp++t++++ s+++ al+l +e + Migut.D01232.1.p 133 LVQLLISCAEAVACRDKSHASVLLSELRSNALVFGSAFQRVASCFMQGLADRLALVQPlgaVGYVVVPPRTTTTTSvaSEKREEALRLVYENC 225 689***********************************************99843311133555577777766677888999999** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 P ++f+h++aN+ Ilea+ege+ vH++D++++ +G QW L ++La+Rp++pp+lRiT+vg +e +++g+ L+ +A lg+++e Migut.D01232.1.p 226 PHIQFGHFVANSSILEAFEGERLVHVVDLGMTlglpHGHQWRGLVRSLADRPGPPPRLRITAVGL----CGDEFRAIGDELEAYAVGLGLNLE 314 ************************98873333788**********************....******************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 f+v v+++le+l+ ++++v+pgE+l+Vn++lqlh +++es + +vL+++ +lsP+v+ +veq+++hn++ Fl rf+eal+yysa+fds Migut.D01232.1.p 315 FSV-VESNLENLDHKDIDVRPGEVLVVNSILQLHCVVKESRGALN---SVLRVIHGLSPRVLALVEQDSSHNGPFFLGRFMEALHYYSAIFDS 403 9.7******************************88877777...8**************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362 l+a lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p pl+ + +qak l+ ++ +gy++ ee+g+lvlgW Migut.D01232.1.p 404 LDAVLPKYDTKRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPSPLK--MLAQAKQWLSSINaCEGYTIVEEKGCLVLGW 494 *******************************************************7..6789*****9************* PP GRAS 363 kdrpLvsvSaWr 374 k++p+v++S+W+ Migut.D01232.1.p 495 KSKPIVAASCWK 506 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.995	107	487	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-111	133	506	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MAYNLFHQDS YDDRRSYPIL EDDENAPIWL PPLYDESSNF KRIKRTVSLG AFTSSNSSSS 60 NVSSHIPRTS STSSLSSVPK LQFRDHIMTY TRRYLTVEEE EEEGASVADL VGSEGGQGGG 120 VAGEGNNADG MKLVQLLISC AEAVACRDKS HASVLLSELR SNALVFGSAF QRVASCFMQG 180 LADRLALVQP LGAVGYVVVP PRTTTTTSVA SEKREEALRL VYENCPHIQF GHFVANSSIL 240 EAFEGERLVH VVDLGMTLGL PHGHQWRGLV RSLADRPGPP PRLRITAVGL CGDEFRAIGD 300 ELEAYAVGLG LNLEFSVVES NLENLDHKDI DVRPGEVLVV NSILQLHCVV KESRGALNSV 360 LRVIHGLSPR VLALVEQDSS HNGPFFLGRF MEALHYYSAI FDSLDAVLPK YDTKRAKMEQ 420 FYFAEEIKNI VSCEGPARVE RHERVDQWRR RMSRAGFQPS PLKMLAQAKQ WLSSINACEG 480 YTIVEEKGCL VLGWKSKPIV AASCWKC*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MAYNLFHQDS YDDRRSYPIL EDDENAPIWL PPLYDESSNF KRIKRTVSLG AFTSSNSSSS  60
NVSSHIPRTS STSSLSSVPK LQFRDHIMTY TRRYLTVEEE EEEGASVADL VGSEGGQGGG  120
VAGEGNNADG MKLVQLLISC AEAVACRDKS HASVLLSELR SNALVFGSAF QRVASCFMQG  180
LADRLALVQP LGAVGYVVVP PRTTTTTSVA SEKREEALRL VYENCPHIQF GHFVANSSIL  240
EAFEGERLVH VVDLGMTLGL PHGHQWRGLV RSLADRPGPP PRLRITAVGL CGDEFRAIGD  300
ELEAYAVGLG LNLEFSVVES NLENLDHKDI DVRPGEVLVV NSILQLHCVV KESRGALNSV  360
LRVIHGLSPR VLALVEQDSS HNGPFFLGRF MEALHYYSAI FDSLDAVLPK YDTKRAKMEQ  420
FYFAEEIKNI VSCEGPARVE RHERVDQWRR RMSRAGFQPS PLKMLAQAKQ WLSSINACEG  480
YTIVEEKGCL VLGWKSKPIV AASCWKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-64	124	505	10	378	Protein SCARECROW
5b3h_A	7e-64	124	505	9	377	Protein SCARECROW
5b3h_D	7e-64	124	505	9	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D01232.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830560.1	0.0	PREDICTED: DELLA protein RGA2-like
TrEMBL	A0A022RSM9	0.0	A0A022RSM9_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.D01232.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8167	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-80	RGA-like 1

Link Out ? help Back to Top
Phytozome	Migut.D01232.1.p