PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 725aa MW: 81484.2 Da PI: 6.2945 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.3 | 6.2e-23 | 109 | 210 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + Migut.D01190.1.p 109 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RG 198 99*****************************7333.34459************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+ +v+r+ Migut.D01190.1.p 199 ENGELRAGVRRA 210 999999999985 PP | |||||||
2 | Auxin_resp | 121 | 8.9e-40 | 235 | 317 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d++p rWp+SkWr+Lk Migut.D01190.1.p 235 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDEYMESVKSNYSIGMRFKMKFEGEEAPEQRYTGTIVGIEDAHPKRWPESKWRCLK 317 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-41 | 104 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-40 | 105 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.52E-20 | 107 | 209 | No hit | No description |
PROSITE profile | PS50863 | 11.575 | 109 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-21 | 109 | 210 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-21 | 109 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.2E-37 | 235 | 317 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.8E-9 | 604 | 701 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-10 | 606 | 690 | No hit | No description |
PROSITE profile | PS51745 | 22.291 | 613 | 695 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MDASEVSIDG HNDAEGCNLA HGNSGAGKVD AETALYTELW RACAGPLVTV PREHELVFYF 60 PQGHIEQAEP DTDEVFAQVT LMPEPNQDEN AVKKEPPPAP PPRFNVHSFC KTLTASDTST 120 HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV 180 FVSSKRLVAG DAFIFLRGEN GELRAGVRRA MRQQSNAPSS VISSHSMHLG VLATAWHAIQ 240 TKTMFTVYYK PRTSPAEFIV PYDEYMESVK SNYSIGMRFK MKFEGEEAPE QRYTGTIVGI 300 EDAHPKRWPE SKWRCLKVRW DETSAIPRPD RVSPWKTEHA LSPPALNPLP LPRHKRPRSS 360 VLPSSPDSSV LTREASLKMT VVETSSEKPF LWDPSLDDDK IDVSASRRFT DLLSGFDSKN 420 NSPRDFVSHF SKRQRQGEFS FDDNNNIWST TTPSSSSYGL SLNIMESSSK NNNGEFRYGD 480 FGDYSNYPQA NWFMMPPPIS PYLQIPQARS REILPKSLFA QQKHDAIVKP KEGNNCKLFG 540 YPLVSNSAPS DQAFLHRNPT VEPSDCTKNA VHSNQSPVFE SDQRSDLSKG SKVVDYPVAT 600 IEKESKGHSA STRSCTKVHK QGSALGRSVD LTKFENYDGL ISELDTIFEF NGELKDRNKN 660 WLVVYIDDED EMMLVGDDPW EEFCGMVRKI LILTKEEVQR MNPATLSSKG EENSSMPLSS 720 PDDC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-149 | 19 | 338 | 1 | 353 | Auxin response factor 1 |
4ldw_A | 1e-149 | 19 | 338 | 1 | 353 | Auxin response factor 1 |
4ldw_B | 1e-149 | 19 | 338 | 1 | 353 | Auxin response factor 1 |
4ldx_A | 1e-149 | 19 | 338 | 1 | 353 | Auxin response factor 1 |
4ldx_B | 1e-149 | 19 | 338 | 1 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01190.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852739.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 2-like | ||||
Swissprot | K4DF01 | 0.0 | ARF2B_SOLLC; Auxin response factor 2B | ||||
TrEMBL | A0A022QBB2 | 0.0 | A0A022QBB2_ERYGU; Auxin-responsive protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2618 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01190.1.p |
Publications ? help Back to Top | |||
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