PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01147.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 338aa    MW: 37976.9 Da    PI: 9.0839
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-1555114155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n    k+ ++++lg +  +e Aa+a++ a++k++g
  Migut.D01147.1.p  55 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYNEEEAAARAYDLAALKYWG 114
                       57*******************999955656446*************************98 PP
2AP249.79.4e-16157208155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ +++g
  Migut.D01147.1.p 157 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAATAYDMAAIEYRG 208
                       89****99**********988422...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-1655123IPR016177DNA-binding domain
PfamPF008472.5E-1255114IPR001471AP2/ERF domain
PROSITE profilePS5103220.03356122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-1656122IPR001471AP2/ERF domain
SMARTSM003802.7E-2556128IPR001471AP2/ERF domain
PRINTSPR003674.1E-65768IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-17157218IPR016177DNA-binding domain
CDDcd000189.52E-23157218No hitNo description
PfamPF008472.6E-11157208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18158217IPR001471AP2/ERF domain
PROSITE profilePS5103218.215158216IPR001471AP2/ERF domain
SMARTSM003801.9E-25158222IPR001471AP2/ERF domain
PRINTSPR003674.1E-6198218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAKSSKKKKS PTTTTTSSSS STTTTTTTAA AAGKTEKKKR TRKSVPRESP QPRSSIYRGV  60
TRHRWTGRYE AHLWDKNCWN ESQNKKGRQV YLGAYNEEEA AARAYDLAAL KYWGQDIILN  120
FPFTAYEDEL KEMEGQSKEE YICSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVLG  180
NKYLYLGTYA TQEEAATAYD MAAIEYRGVN AITNFDLSHY IKWLQPLQND VDNNTLKNPS  240
QENTKTTGSS SDSTGGTTTT LSALELVLKS SKFKEMMEQT TATCNSSSNP NPDPDPPRSS  300
FPDDIQTSFD FQDSSSFVEE HDIMFGNYDS FVSSMFQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01147.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852610.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A022QBE80.0A0A022QBE8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-87ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]