PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D01005.1.p

Common Name

LOC105972298, MIMGU_mgv1a001350mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 836aa MW: 91942.8 Da PI: 6.2421

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D01005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	14	72	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Migut.D01005.1.p 14 KYVRYTPEQVDALERLYHDCPKPSSVRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 72 5679*****************************************************97 PP
2	START	167.5	8.9e-53	159	367	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++e+l+v+ + g+ + Migut.D01005.1.p 159 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVEVLNVLPTPngGTTE 250 789*****************************************************.8888888888***********87557 PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h++l+++ ++++l Migut.D01005.1.p 251 LLYTQLYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLSNTQNGPSmpaVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMNLEAWNVPEVL 343 ******************************************999899************************************* PP HHHHHHHHHHHHHHHHHHTXXXXX CS START 182 rslvksglaegaktwvatlqrqce 205 r+l++s+++ ++k ++a+l+++++ Migut.D01005.1.p 344 RPLYESSTVLAQKVTMAALRHLKQ 367 *****************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.418	9	73	IPR001356	Homeobox domain
SMART	SM00389	1.6E-15	11	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-16	14	76	IPR009057	Homeodomain-like
CDD	cd00086	2.92E-16	14	74	No hit	No description
Pfam	PF00046	6.6E-16	15	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-18	16	72	IPR009057	Homeodomain-like
CDD	cd14686	4.03E-6	66	105	No hit	No description
PROSITE profile	PS50848	26.074	149	377	IPR002913	START domain
CDD	cd08875	4.97E-77	153	369	No hit	No description
SuperFamily	SSF55961	9.89E-39	158	370	No hit	No description
SMART	SM00234	1.7E-37	158	368	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.5E-24	158	364	IPR023393	START-like domain
Pfam	PF01852	1.8E-50	159	367	IPR002913	START domain
Pfam	PF08670	1.9E-49	692	833	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MPMSCKDSHM DNGKYVRYTP EQVDALERLY HDCPKPSSVR RQQLIRECPI LSNIEPKQIK 60 VWFQNRRCRE KQRKEASRLQ GVNRKLTAMN KLLMEENDRL QKQVSQLVYE NSYFRQHTPS 120 NALATKDTSC ESVVTGGQQN HLTPQHTPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ 180 MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR DCRAVEVLNV 240 LPTPNGGTTE LLYTQLYAPT TLAPGRDFWL LRYTSVMDDG SLVVCERSLS NTQNGPSMPA 300 VQNFVRAEML PSGYLIRPCD GGGSIIHIVD HMNLEAWNVP EVLRPLYESS TVLAQKVTMA 360 ALRHLKQIAQ DISQSSNVSN WGRRPAALRA LSHRLSRGFN EALNGFGDDG WSLIGNDGMD 420 DVTILVNSNP EKLMGLNISF TNGYTSISNS VLCAKASMLL QNVPPAILLR FLREHRSEWA 480 DNFDTYSAAA VKIGPSNFLG TRVANFGGQV VLPLAQTIEH EELLEVIKLE GVGQSPEDSM 540 MPRDLFLLQL CSGMDENAVG TCGELIFAPI DASFVEDAPL LPSGFRIIPL DPGKDASSPN 600 RTLDLASALE TGNKPSSDLA VTNGNSRSVM TIAFQFAFEN HMQENVACGA RQYVRSIISS 660 VQRVALALSS TNLGPNSGLR SMLGGTTPEA HTLARWICQS YRNYMGDELL KPNGEGSESI 720 LKALWHHSDA ILCCSLKAVP VFTFANQAGL DMLETTLVAL QDISLEKIFD DHGRKNLCSE 780 FPQIMNQGFA TLQGGICLSS MSRPISYERS VAWKVLDEDA NPHCFCFMFV NWSLV*

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MPMSCKDSHM DNGKYVRYTP EQVDALERLY HDCPKPSSVR RQQLIRECPI LSNIEPKQIK  60
VWFQNRRCRE KQRKEASRLQ GVNRKLTAMN KLLMEENDRL QKQVSQLVYE NSYFRQHTPS  120
NALATKDTSC ESVVTGGQQN HLTPQHTPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR DCRAVEVLNV  240
LPTPNGGTTE LLYTQLYAPT TLAPGRDFWL LRYTSVMDDG SLVVCERSLS NTQNGPSMPA  300
VQNFVRAEML PSGYLIRPCD GGGSIIHIVD HMNLEAWNVP EVLRPLYESS TVLAQKVTMA  360
ALRHLKQIAQ DISQSSNVSN WGRRPAALRA LSHRLSRGFN EALNGFGDDG WSLIGNDGMD  420
DVTILVNSNP EKLMGLNISF TNGYTSISNS VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNFDTYSAAA VKIGPSNFLG TRVANFGGQV VLPLAQTIEH EELLEVIKLE GVGQSPEDSM  540
MPRDLFLLQL CSGMDENAVG TCGELIFAPI DASFVEDAPL LPSGFRIIPL DPGKDASSPN  600
RTLDLASALE TGNKPSSDLA VTNGNSRSVM TIAFQFAFEN HMQENVACGA RQYVRSIISS  660
VQRVALALSS TNLGPNSGLR SMLGGTTPEA HTLARWICQS YRNYMGDELL KPNGEGSESI  720
LKALWHHSDA ILCCSLKAVP VFTFANQAGL DMLETTLVAL QDISLEKIFD DHGRKNLCSE  780
FPQIMNQGFA TLQGGICLSS MSRPISYERS VAWKVLDEDA NPHCFCFMFV NWSLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D01005.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012852689.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A022QAS7	0.0	A0A022QAS7_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.D01005.1.p
Entrez Gene	105972298

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]