PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D00966.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 336aa MW: 37493.7 Da PI: 5.7335

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D00966.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.8e-39	53	151	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkCa+dC+lapyfp++++++f n+h+lFG+sn++k++++l++ +++am++++++++ara dPv G++++i++l+qq++ +kae Migut.D00966.1.p 53 ACAACKYQRRKCASDCILAPYFPHDRQRQFLNAHRLFGVSNIVKIVRHLDPPAKDHAMRTIIFQSDARAADPVGGCYRIIRDLEQQISIAKAE 145 7******************************************************************************************** PP DUF260 94 lallke 99 l+ + + Migut.D00966.1.p 146 LEIVLH 151 *98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.462	52	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-36	53	148	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MHNNKNTTAT TINPTINYTS NNNNTNININ ISTNNSTSAA AHHQRSHGST IQACAACKYQ 60 RRKCASDCIL APYFPHDRQR QFLNAHRLFG VSNIVKIVRH LDPPAKDHAM RTIIFQSDAR 120 AADPVGGCYR IIRDLEQQIS IAKAELEIVL HHLALCRAAR HHHHHQAAEI PDQAANCGDS 180 IVDGQDKWRV DEYPEEDEVV VIDDLNSWSC MHGNDNGNGN GNDNWNGNGN SHAESTSSSF 240 PYHNNHHHHM SNLSLEECHD MKTILDHLSG DDDDARDDFN FDSHGNIIPS NNGTLTEENA 300 IFDQEEEDGS FSYNIQDQHD LKAAATFFTL TNCDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-22	54	147	12	105	LOB family transfactor Ramosa2.1
5ly0_B	6e-22	54	147	12	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D00966.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835116.1	0.0	PREDICTED: LOB domain-containing protein 22
TrEMBL	A0A022S0S3	0.0	A0A022S0S3_ERYGU; Uncharacterized protein
STRING	Migut.D00966.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-48	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Migut.D00966.1.p