PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00812.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 28236.2 Da PI: 4.6575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 113 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp + kr++lg+++t+eeAa +++a+ +l+g Migut.D00812.1.p 113 KKFRGVRQRP-WGRWAAEIRDP-----SlgKRVWLGTYDTPEEAASVYDRAAVELKG 163 59********.**********9.....445***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 9.6E-67 | 9 | 253 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 3.69E-30 | 113 | 172 | No hit | No description |
SMART | SM00380 | 1.3E-36 | 114 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.367 | 114 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-21 | 114 | 172 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-12 | 114 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-29 | 114 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-10 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEEELQPPFF AVKFTEHVVT TNKYYCINHH RRSTNLRRRI VRIVLNDADA TDSDSDGDDE 60 SNAGGFARRV VRRHVEEIKF EGSPATAAAA QVTKKDAKRG RDPPVSDELS SRKKFRGVRQ 120 RPWGRWAAEI RDPSLGKRVW LGTYDTPEEA ASVYDRAAVE LKGSAAVVNF PAVVVTTEST 180 TTESESVSSA NDAALSPTSV LRYEEMTPFD GIGVDFGFDV DWPLSLPDVG MSGNFFAEEF 240 GEFDFDDFIN DLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 113 | 178 | 4 | 70 | ATERF1 |
3gcc_A | 7e-21 | 113 | 178 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00812.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836658.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 4e-64 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A022S408 | 1e-150 | A0A022S408_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 9e-31 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00812.1.p |