PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00710.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 419aa    MW: 46818.2 Da    PI: 4.7314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-162673148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT  Ed +lv++v ++G g+W+++ +  g+ R++k+c++rw ++l
  Migut.D00710.1.p 26 KGPWTSAEDAILVEYVSKYGEGNWNAVQKNSGLARCGKSCRLRWANHL 73
                      79******************************************9986 PP
2Myb_DNA-binding50.74e-1679122146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++++eE+ l+v+++ ++G++ W++ a++++ gRt++++k++w++
  Migut.D00710.1.p  79 KGAFSPEEEHLIVELHSKMGNK-WARMAAELP-GRTDNEIKNYWNT 122
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1982173IPR017930Myb domain
SuperFamilySSF466893.74E-3023120IPR009057Homeodomain-like
SMARTSM007172.0E-132575IPR001005SANT/Myb domain
PfamPF002491.2E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-232780IPR009057Homeodomain-like
CDDcd001678.52E-112873No hitNo description
PROSITE profilePS5129425.38174128IPR017930Myb domain
SMARTSM007179.2E-1578126IPR001005SANT/Myb domain
PfamPF002494.0E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2581127IPR009057Homeodomain-like
CDDcd001672.11E-1081122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTSESDEKIM AAADDANDGG NNPLKKGPWT SAEDAILVEY VSKYGEGNWN AVQKNSGLAR  60
CGKSCRLRWA NHLRPNLKKG AFSPEEEHLI VELHSKMGNK WARMAAELPG RTDNEIKNYW  120
NTRIKRKHRA GLPVYPPDIC TLQSPNENRN EQISDEMTIL SSIDSHYPNL TLLNNFYNIP  180
TVEFKNPEMN HHHHLYPPPP LLDHNVPAKR LCGAGSFFPD YLSADIGSHF QTDNCLQIAQ  240
SFIQSCSSCS SSSSSSEPSD WPMMKMELPS LQTHVGGAMW GPPPSPTLPP LESVDTQTLL  300
CDILPENRNS GLLDAVLYES RIMKNSKNQD FHETAYCDYS SPSLFSEGST PTSGTSFDEP  360
EYLENITGCE VKGGFETTKQ MNFNRPDFLL DSDYIDPRQD FIEDVLLTED AVGNFLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31241275107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00710.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851020.10.0PREDICTED: uncharacterized protein LOC105970707
RefseqXP_012851081.10.0PREDICTED: uncharacterized protein LOC105970707
TrEMBLA0A022S0420.0A0A022S042_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-67myb domain protein 33