PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00643.1.p | ||||||||
Common Name | LOC105976946, MIMGU_mgv1a006491mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 443aa MW: 50293.7 Da PI: 6.3816 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 449.5 | 2.2e-137 | 47 | 439 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA++vs+g++e+a+ +L ++s+lasp+gd+mqR+a+yf eALa r++r+++++yka+++++ s see+ ++k+fs+ P+ k+ Migut.D00643.1.p 47 LIHLLVTCANHVSQGSFENANIALDQISHLASPNGDTMQRIASYFSEALADRILRTWPGIYKAFRSTKIS--FLSEEILVRKMFSDFLPFTKV 137 689*************************************************************999887..69******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 + ++aNqaI ea+ege++vH iD+++ ++QW aL+q L +Rpegpp+lRiTg+++ +ke l ++++ L++ Ae+l++pf+fn+ ++ +l Migut.D00643.1.p 138 ASVIANQAIIEAMEGEKMVHLIDLNAADPTQWRALIQDLRARPEGPPHLRITGIHH----RKEVLDHMARILTQEAEKLDLPFQFNP-IVCKL 225 ********************************************************....9**************************.5788* PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll..........................desvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 e+le+e+Lrvk+gEala+++ qlh+ll + ++s++ ++d++++ +++lsPk++vv+eq++dhn++ + Migut.D00643.1.p 226 ENLEFENLRVKTGEALAISSFTQLHTLLapnndprngshlqremldkdnesgssSPPLSSSARIDSFISGLWGLSPKIMVVTEQDSDHNGKGL 318 ************************************************9999655555555599***************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +er++ al++y+alfd+le++lpres er k+E+++lg+ei+n++aceg er+erhe+lekW++r+e +GF +vpls++a+ qak+l++ ++ Migut.D00643.1.p 319 MERLSGALYFYAALFDCLESSLPRESLERLKMEKMVLGEEIKNIIACEGVERKERHEKLEKWSQRFEFCGFANVPLSYYAMLQAKRLMQGFNC 411 ********************************************************************************************* PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 +gy++++e+g++v++W+drpL+svSaWr Migut.D00643.1.p 412 EGYNIKDENGCVVICWQDRPLFSVSAWR 439 ***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.025 | 21 | 419 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.5E-135 | 47 | 439 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MFQEEGSSSV TSSPLQMFPM MSLPPSLTMS PYPWLKDLKP EERGLYLIHL LVTCANHVSQ 60 GSFENANIAL DQISHLASPN GDTMQRIASY FSEALADRIL RTWPGIYKAF RSTKISFLSE 120 EILVRKMFSD FLPFTKVASV IANQAIIEAM EGEKMVHLID LNAADPTQWR ALIQDLRARP 180 EGPPHLRITG IHHRKEVLDH MARILTQEAE KLDLPFQFNP IVCKLENLEF ENLRVKTGEA 240 LAISSFTQLH TLLAPNNDPR NGSHLQREML DKDNESGSSS PPLSSSARID SFISGLWGLS 300 PKIMVVTEQD SDHNGKGLME RLSGALYFYA ALFDCLESSL PRESLERLKM EKMVLGEEIK 360 NIIACEGVER KERHEKLEKW SQRFEFCGFA NVPLSYYAML QAKRLMQGFN CEGYNIKDEN 420 GCVVICWQDR PLFSVSAWRY RR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-70 | 30 | 441 | 1 | 380 | Protein SCARECROW |
5b3h_D | 5e-70 | 30 | 441 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00643.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857698.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A022S4E4 | 0.0 | A0A022S4E4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00643.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00643.1.p |
Entrez Gene | 105976946 |
Publications ? help Back to Top | |||
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