PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00575.1.p | ||||||||
Common Name | MIMGU_mgv1a022776mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | AP2 | ||||||||
Protein Properties | Length: 569aa MW: 62501.3 Da PI: 6.3814 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33 | 1.5e-10 | 172 | 228 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Migut.D00575.1.p 172 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDMAALKYWG 228 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 47 | 6.3e-15 | 273 | 322 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Migut.D00575.1.p 273 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 322 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.62E-18 | 172 | 238 | No hit | No description |
SuperFamily | SSF54171 | 3.27E-14 | 172 | 238 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.1E-8 | 172 | 228 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.148 | 173 | 236 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 173 | 237 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-22 | 173 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 174 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.77E-24 | 271 | 330 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-18 | 271 | 331 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.375 | 272 | 330 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-18 | 272 | 330 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 272 | 336 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 273 | 322 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 312 | 332 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MNSNNWLSFP LSPTQTPQSH HFSLGLVNDN INETPFQNQG YGDWNLINNQ EANEVPKVAD 60 FLGVSKSDHH AALIPYNEIQ SSDSDYMFSS NSLVSVQHTL ASAVTNNNYE SLQENGCNMQ 120 QLTLSMGSGN NKGSTSETSA SSATAIAENT TTSIVEAATP RRTLDTFGQR TSIYRGVTRH 180 RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEDKAARAYD MAALKYWGTS TTTNFPISNY 240 EKEIEDMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL 300 GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MNRYDVKAIL ESSTLPIGGG AAKRLKEAQA 360 VESSRKREEM ISLGSTTTFQ YGSPSGGGIG LPLQSYPFTQ NHHPYETQPL LTLQNHDHLS 420 NHYSNNNNNN NNQESSSHYQ SYIQTQLQLQ QQQQGYYGNY LQSSNDPVLL HGLMNNMGST 480 SNSVMDHNGS TSTGGSYSGA GFLGMGMGMG MSMGEGGSGS AEEQLAMVKV DYDHMGSGDN 540 AATYTGWSGE TTVQGSSNPG LFTMWNDI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00575.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835671.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A022S0I0 | 0.0 | A0A022S0I0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00575.1.p |