PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.D00564.1.p | ||||||||
Common Name | LOC105951054, MIMGU_mgv1a020761mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18317.6 Da PI: 7.573 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 147 | 5.4e-46 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca+dC +apyfpae+p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ae Migut.D00564.1.p 14 PCAACKLLRRRCAEDCLFAPYFPAEEPHKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQAE 106 7******************************************************************************************** PP DUF260 94 lallkee 100 lal+++e Migut.D00564.1.p 107 LALAQAE 113 ***9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.484 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-45 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MKDSGRKQGG AASPCAACKL LRRRCAEDCL FAPYFPAEEP HKFASVHKVF GASNVNKMLQ 60 ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQAELALA QAEVVHLRMR 120 QLSSNADNPS PSTKGRRSHH HQPKSLFNMD MSTEHDNNMD DPFWP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-50 | 10 | 124 | 7 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-50 | 10 | 124 | 7 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.D00564.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829903.1 | 1e-122 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 3e-66 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A022S1U0 | 1e-121 | A0A022S1U0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00564.1.p | 1e-121 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-62 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.D00564.1.p |
Entrez Gene | 105951054 |