PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00418.1.p | ||||||||
Common Name | LOC105956577, MIMGU_mgv1a019154mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 17549.2 Da PI: 6.5191 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.7e-20 | 28 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrd+++ +r++lg+f taeeAa+a++ a+ ++g Migut.D00418.1.p 28 KFRGVRRRP-WGKFAAEIRDCNNH--GARVWLGTFATAEEAARAYDLAAYTMRG 78 89*******.**********7443..3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-22 | 28 | 87 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.07E-27 | 28 | 87 | No hit | No description |
PROSITE profile | PS51032 | 23.117 | 28 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-15 | 28 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-33 | 28 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 28 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEGNSKDRAA AAKEDKDGGG GGGGEGVKFR GVRRRPWGKF AAEIRDCNNH GARVWLGTFA 60 TAEEAARAYD LAAYTMRGSM AVLNFPEEYS FFTNTSNNCH SSTTTTSALS TSALSTSASS 120 SSEQRKEVFE FEYYDNKLLE DLLEFGEKRN HYASAFHWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-35 | 18 | 138 | 4 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00418.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835886.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 4e-38 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A022S544 | 1e-113 | A0A022S544_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 2e-19 | Ethylene-responsive element binding factor 14 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00418.1.p |
Entrez Gene | 105956577 |
Publications ? help Back to Top | |||
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