PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00401.1.p
Common NameLOC105952451, MIMGU_mgv1a005352mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 488aa    MW: 53949.4 Da    PI: 6.334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00401.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13338384455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Migut.D00401.1.p 338 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 384
                       799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.3E-4349229IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.66334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18334399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-14337388No hitNo description
Gene3DG3DSA:4.10.280.107.2E-18338402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10338384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-16340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGNKFWLNGE DKAVVESVLG SEATEYFAWS ASNNVLSEFS ASGGDLGVQQ TLCKIVDGSD  60
WTYAIYWHVS RSKSGKSALI WGDGHCREPK EGEYDTGNFS EDGKKPVEGD CRKRVLQKIH  120
ACFGGSEDDN VAAKLDQVSH VEMFYLTSMY FAFPFDKPSI PSQSFNSGRT IWVSDMKSCL  180
ERYQSRSYLA KLAGFETLVY IPSKSGVIEI GSRKSIPENQ SIIQSAKSII VKVNSTHAKP  240
FLPKVFGQEL NLGGSKSSTI SISFSPKVED DSVLSSESYD LQVYGNSSNG HRTDDIDAKI  300
YPHLNMDQIA ENSFVLSDDQ RPRKRGRKPA NGREEALNHV EAERQRREKL NQRFYALRAV  360
VPNISKMDKA SLLGDAIAYI TDLQTKVRVM EAEKGVVNNN NNKQHESNIP DIDFLERHED  420
SVLRVSCPLE SHPVSGVVRA LRENQVAAHE SVISINEGGE VVHTFTIQTP GGGAEELKDK  480
LAAALLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28332399269Transcription factor MYC2
5gnj_B1e-28332399269Transcription factor MYC2
5gnj_E1e-28332399269Transcription factor MYC2
5gnj_F1e-28332399269Transcription factor MYC2
5gnj_G1e-28332399269Transcription factor MYC2
5gnj_I1e-28332399269Transcription factor MYC2
5gnj_M1e-28332399269Transcription factor MYC2
5gnj_N1e-28332399269Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00401.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831462.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A022S1460.0A0A022S146_ERYGU; Uncharacterized protein
STRINGMigut.D00401.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-151bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]