PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00287.1.p
Common NameMIMGU_mgv1a002681mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 653aa    MW: 71249.1 Da    PI: 6.1479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00287.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.1e-14474519454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h  +ErrRR+r+N++f  Lr+l+P       +K++Ka+iL  +++Y+k+L
  Migut.D00287.1.p 474 NHVLAERRRRERLNEKFIALRSLVPFI-----TKMDKASILGDTIDYVKQL 519
                       7999**********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5414198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.765470519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-18471532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17474534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11474519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-17476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-7484524No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MDVSPPPPAR KSRLQSVLRA AVQTVEWTYS LFWQLSPQQG ILVWREGYYN GAIKTRKTIQ  60
PTEVTTEEAT VHRSHQLREL YESLSATDAG SSQQSRRPSA ALSPEDLTES EWFYLMCVSF  120
SFPPGVGLPG KAYSKRQHIW LTKASDADSK AFSRAILAKT AGIQTVVCIP LLDGVVELGT  180
TEMVQEDTGI IRRVKSFFNN NNGGQDPNPP RPALSEHSTS NPPTSSEPRF PSSPAAAVVP  240
PTHEPTFFEM GSHVAEEGDD DDEVAETGGI GSLSPAENTV DADGTTHSTG HEPMQVDIII  300
SENIIRAGTP DDDCSNDLDS NFHLLAVSPP GISTENHPGA GGGLDKPGIS VQTWQLKDDP  360
MTSNIIPPHS AGLPSFDLVV QEDTHYSQTV WSILETQSNR WSKQSSSTTM SSSGAVSAFS  420
RWCRRKNLLV GGGSSQWALK YILFTVPLLH KMSTACNNIK ETTNNPPPDE LSANHVLAER  480
RRRERLNEKF IALRSLVPFI TKMDKASILG DTIDYVKQLL KRIQELEYSN TNNKHRSVAA  540
CSGKEKRKMK VVAEGGGSGG GTVAEEVAQV EVSIIESDAL VEIQCVQNEG LLLDVMQVLA  600
QFGIHVTTVQ SSLSNGIFTA ELRAKVKENV NGRKPSIVEV KRSIHQIIIL HR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-2772012195Transcription factor MYC3
4rqw_B4e-2772012195Transcription factor MYC3
4rs9_A4e-2772012195Transcription factor MYC3
4yz6_A4e-2772012195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478483ERRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00287.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832485.10.0PREDICTED: basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A022S3S40.0A0A022S3S4_ERYGU; Uncharacterized protein
STRINGMigut.D00287.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-86bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]