PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00078.1.p | ||||||||
Common Name | LOC105955074, MIMGU_mgv1a012761mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 27490.9 Da PI: 4.8695 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.4e-30 | 53 | 111 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+ Migut.D00078.1.p 53 SDCWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCKTDASMLIITYTSTHNHP 111 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-31 | 45 | 113 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-25 | 48 | 113 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-34 | 52 | 112 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.779 | 53 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-25 | 54 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MQEIDHHSSE SNCSTLAEEM HASKKRKVAE RTVVAVKIQG NDKRQHRNEG PPSDCWSWRK 60 YGQKPIKGSP YPRGYYKCST SKGCSAKKQV ERCKTDASML IITYTSTHNH PGPDSTLATN 120 HKQDPDEINE EITDDQPTTP KQEQEAELTI PDQETNGEDR FQYSQSPFNS NQEDSNFQEN 180 LETSSVLYDQ DPKPFTHGGP MEFSSEENDF FDELEELPSS SFFKSFMRSS FCKDRSIVNP 240 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-21 | 53 | 113 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 5e-21 | 53 | 113 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00078.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834230.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 | ||||
TrEMBL | A0A022S217 | 1e-180 | A0A022S217_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00078.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11281 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-35 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00078.1.p |
Entrez Gene | 105955074 |