PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D00024.1.p

Common Name

MIMGU_mgv1a000744mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

SBP

Protein Properties

Length: 654aa MW: 72005 Da PI: 6.9416

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D00024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.7e-41	149	225	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+ Migut.D00024.1.p 149 VCQVEGCGSDLSRAKDYHRRHKVCEMHSKASKALVGNQMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTL 225 6*************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.4E-34	143	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.248	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.8E-38	149	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.9E-30	150	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MEARIGGQAQ LYYGMASTDL NAVRKRSLEW DPNDWRWDGD LFIATPLNRT SSNYQSRQLF 60 PLESGITTTR ASSNSSSSDS DELSQGVLKG NMELEKKRRA SDVGDNNLAD DTLNLNLGGR 120 GYTKPGNVEP ATTAKKTKLG GGATPNRSVC QVEGCGSDLS RAKDYHRRHK VCEMHSKASK 180 ALVGNQMQRF CQQCSRFHAL QEFDEGKRSC RRRLAGHNKR RRKTLTDNVS NNSPVNDSQA 240 SGYLLMSILK ILSNMHSDRT NHDNQDLLSH LLQSLASQGS NQWDRSIPAH LKESQNLLNN 300 LPSLGNSELA SVLLSNGSLG QRSRQEHSNH GDDMPRNAGD LHTASQSPGN VLHSQASSQI 360 YPQGREISGE RSKANNFDLN DVYVDSDDGM EYIERSTAPQ GLGTVSIGHP SWVQRESDQS 420 SPPQTSGNSD SASAQSPSSS IGEDQRHTDR IVFKLFGKEP SDFPIVLRAQ IFDWLSNSPS 480 DIESYIRPGC VILTLYLRLP ESEWEELYCD LSSSLTRLLN FSDDINFWST GWIYARVQNQ 540 IAFACNGQVV VNTSLPLGTD NYGTILSVRP IAVTSSAQAE FVVKGFNLSL PTTRLLCALE 600 GKYLEAKSES VEHVDGFEGN AQYIKYSCSI PAVTGRGLWR LKIMVSVAAL LPS*

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MEARIGGQAQ LYYGMASTDL NAVRKRSLEW DPNDWRWDGD LFIATPLNRT SSNYQSRQLF  60
PLESGITTTR ASSNSSSSDS DELSQGVLKG NMELEKKRRA SDVGDNNLAD DTLNLNLGGR  120
GYTKPGNVEP ATTAKKTKLG GGATPNRSVC QVEGCGSDLS RAKDYHRRHK VCEMHSKASK  180
ALVGNQMQRF CQQCSRFHAL QEFDEGKRSC RRRLAGHNKR RRKTLTDNVS NNSPVNDSQA  240
SGYLLMSILK ILSNMHSDRT NHDNQDLLSH LLQSLASQGS NQWDRSIPAH LKESQNLLNN  300
LPSLGNSELA SVLLSNGSLG QRSRQEHSNH GDDMPRNAGD LHTASQSPGN VLHSQASSQI  360
YPQGREISGE RSKANNFDLN DVYVDSDDGM EYIERSTAPQ GLGTVSIGHP SWVQRESDQS  420
SPPQTSGNSD SASAQSPSSS IGEDQRHTDR IVFKLFGKEP SDFPIVLRAQ IFDWLSNSPS  480
DIESYIRPGC VILTLYLRLP ESEWEELYCD LSSSLTRLLN FSDDINFWST GWIYARVQNQ  540
IAFACNGQVV VNTSLPLGTD NYGTILSVRP IAVTSSAQAE FVVKGFNLSL PTTRLLCALE  600
GKYLEAKSES VEHVDGFEGN AQYIKYSCSI PAVTGRGLWR LKIMVSVAAL LPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	140	223	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D00024.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834782.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	1e-174	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A022S4J4	0.0	A0A022S4J4_ERYGU; Uncharacterized protein
STRING	Migut.D00024.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	1e-154	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Migut.D00024.1.p

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]