PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C01402.1.p
Common NameLOC105974419, MIMGU_mgv1a012912mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family Whirly
Protein Properties Length: 237aa    MW: 25700.5 Da    PI: 10.2251
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C01402.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly205.75.6e-64561931138
            Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                       s+yk+kaal+ ++ +p f++l+sg  k++r+G+++l++ +a++erkydW+k+q+falsatev++l++l+sk+sceffhdp++ +sn+G+vrk+
  Migut.C01402.1.p  56 SIYKGKAALSADPLLPMFTKLQSGGYKVERRGSIMLTFWPAIGERKYDWDKRQKFALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKS 148
                       7******************************************************************************************** PP

            Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                       l+++ ++dGsG+fv+lsv n+++k+n++f+vPv+ aefav+r+++
  Migut.C01402.1.p 149 LSIKAHADGSGYFVSLSVVNNILKTNDRFVVPVTTAEFAVMRTAF 193
                       *******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.9E-7544212IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544479.42E-6750229IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-5957191IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLKLSRLLLQ SSSRDSLSLK SLVSEATIDL KLLRGLTTQS GISTGKSAAK VFAPYSIYKG  60
KAALSADPLL PMFTKLQSGG YKVERRGSIM LTFWPAIGER KYDWDKRQKF ALSATEVGSL  120
ISLGSKDSCE FFHDPSMLSS NAGQVRKSLS IKAHADGSGY FVSLSVVNNI LKTNDRFVVP  180
VTTAEFAVMR TAFTFALPHL IGWDQYTNQV PHCASKSSPT AAAAALPQLP SSEWDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A4e-98452095169StWhy2
3n1i_A4e-98452095169protein StWhy2
3n1j_A4e-98452095169Protein StWhy2
3n1k_A4e-98452095169protein StWhy2
3n1l_A4e-98452095169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C01402.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854973.11e-173PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0341e-105WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A022Q8351e-172A0A022Q835_ERYGU; Uncharacterized protein
STRINGMigut.C01402.1.p1e-173(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-93WHIRLY 2