PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.C01339.1.p | ||||||||
Common Name | MIMGU_mgv1a025348mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 25021.2 Da PI: 8.9255 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.8 | 8e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + Migut.C01339.1.p 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 54 | 7.4e-19 | 88 | 176 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllG.edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + + ++e++ Lk eie Lq+ +R + G + ++++ eL+ Le+ Le + ++Rs K++++ ++i+ l+ ke+ lqe+nk L++k++ Migut.C01339.1.p 88 QINTEAKEEISMLKHEIEILQKGLRYIAGgGSADPMTSVELNVLEKYLEIWIYHVRSAKMDIMAQEIQLLKYKEEILQEANKHLQEKID 176 4556789*******************98725799*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.829 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-27 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.57E-39 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 1.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-19 | 88 | 175 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.54 | 90 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MARGKIQMRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60 GSMPSLIEKY MKYNREIPAA AQHPKGKQIN TEAKEEISML KHEIEILQKG LRYIAGGGSA 120 DPMTSVELNV LEKYLEIWIY HVRSAKMDIM AQEIQLLKYK EEILQEANKH LQEKIDAQYG 180 MVELGPMLTN FDQYPLITTN NINHQYPLTI PNEIFQF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-18 | 1 | 74 | 1 | 73 | MEF2C |
5f28_B | 9e-18 | 1 | 74 | 1 | 73 | MEF2C |
5f28_C | 9e-18 | 1 | 74 | 1 | 73 | MEF2C |
5f28_D | 9e-18 | 1 | 74 | 1 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.C01339.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095942.1 | 1e-114 | agamous-like MADS-box protein AGL12 isoform X1 | ||||
Swissprot | A2YQK9 | 3e-74 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 3e-74 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A022Q436 | 1e-160 | A0A022Q436_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9810 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-70 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.C01339.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|