PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C01100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 494aa MW: 54817.2 Da PI: 4.6279 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 432 | 4.5e-132 | 124 | 492 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cA +++g++++a+++++ l++++s +g+p R+aay++eALaar+ +s+ +lykal+++e + ss++l+a+++++ev+P+++f++ Migut.C01100.2.p 124 SLLFACAASIQNGNFAEASHMINVLRQRVSIQGEPSGRIAAYMVEALAARVESSGRGLYKALKCKEPP---SSDRLSAMQVLFEVCPCFRFGF 213 79*****************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++aN aIlea + e+rvHiiDfdi+qG Q+ +Llq+La+ ++ p++R+Tgv++pes+ l +g+rL+++A+ l+vpfef++ v++++ Migut.C01100.2.p 214 MAANGAILEACKDENRVHIIDFDINQGSQYYTLLQTLAKTSGRRPHVRLTGVDDPESVqrGVGGLTVIGQRLEQLAKDLRVPFEFHA-VTSET 305 ********************************************************99878889***********************.7999* PP GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 + +++++L+++p +Eal+Vn+++qlh+++desvs+ + rd++L++vk+l+Pk+v+vveq++++n+++Fl rf ea +yysa+f+sl+a+l+r+ Migut.C01100.2.p 306 ALVSPSTLDCQPgEEALVVNFAFQLHHMPDESVSTVNLRDRLLRMVKGLNPKLVTVVEQDVNTNTAPFLIRFGEAYDYYSAVFESLDATLGRD 398 ************999****************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 s++r++vE+++l+r+i nvvaceg+er+er e ++kWr+r+++aGF++ p++ ++ +++ l+++++++ y+v+ee+g l +gW+d+ L+++S Migut.C01100.2.p 399 SQDRVNVEKQCLARDIINVVACEGEERIERYEVAGKWRARMSMAGFSSSPIGRNVSGEIRKLIKEYSDR-YTVKEENGGLHFGWEDKMLIVCS 490 *******************************************************************66.*********************** PP GRAS 372 aW 373 aW Migut.C01100.2.p 491 AW 492 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.176 | 96 | 474 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-129 | 124 | 492 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MSLVRPAAFF GNHELYSIKN GDNTSVAQST STSNSDNTES YSSENYGNDP YQPNYESDMI 60 DYDDAQMKLK LQELEHALLD NDDDSDNNYN NGMETENETE DSPKEYSSSG SIFSSTSVAT 120 SPKSLLFACA ASIQNGNFAE ASHMINVLRQ RVSIQGEPSG RIAAYMVEAL AARVESSGRG 180 LYKALKCKEP PSSDRLSAMQ VLFEVCPCFR FGFMAANGAI LEACKDENRV HIIDFDINQG 240 SQYYTLLQTL AKTSGRRPHV RLTGVDDPES VQRGVGGLTV IGQRLEQLAK DLRVPFEFHA 300 VTSETALVSP STLDCQPGEE ALVVNFAFQL HHMPDESVST VNLRDRLLRM VKGLNPKLVT 360 VVEQDVNTNT APFLIRFGEA YDYYSAVFES LDATLGRDSQ DRVNVEKQCL ARDIINVVAC 420 EGEERIERYE VAGKWRARMS MAGFSSSPIG RNVSGEIRKL IKEYSDRYTV KEENGGLHFG 480 WEDKMLIVCS AWM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-60 | 129 | 492 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-60 | 129 | 492 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-60 | 129 | 492 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C01100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843245.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_012843246.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A022QX64 | 0.0 | A0A022QX64_ERYGU; Uncharacterized protein | ||||
STRING | Migut.C01100.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C01100.2.p |
Publications ? help Back to Top | |||
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