PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C01028.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 30660.3 Da PI: 4.6765 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.6 | 1.1e-37 | 44 | 102 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC s+ntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk ++s+ Migut.C01028.1.p 44 TAPNCPRCASSNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKTRRSR 102 5679**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.0E-32 | 45 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.593 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-21 | 48 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MFISTTTSDH HQYSNSIVEC PPPLRPMIMD TNSRKWNFTT KIETAPNCPR CASSNTKFCY 60 YNNYSLSQPR YFCKACRRYW TKGGSLRNVP VGGGCRKTRR SRSSSSSAAA AAAGGGGGSH 120 SGGESEGSTT CIDLAAVFAN YVNQNAEDND ESFSFSPGGS SGSSENNVHQ VNGGCLDLVN 180 GGGDDQVQQV VPGFSVHPGI DGQDFVYQDC GDAFDQLQQG ILGNHELAAD HMLWSEGTNV 240 PSFGSQNPTA EVPDFGLFTP DDQFRISADN WGSFDLSTYE IFSTP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C01028.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376388 | 2e-50 | AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18. | |||
GenBank | AM084360 | 2e-50 | AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829500.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2 | ||||
TrEMBL | A0A022PT43 | 0.0 | A0A022PT43_ERYGU; Uncharacterized protein | ||||
STRING | Migut.C01028.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 1e-29 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.C01028.1.p |