PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00816.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 794aa MW: 88376.7 Da PI: 5.325 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.7 | 1.3e-24 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++ Migut.C00816.2.p 120 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RD 209 99*********************999*****9555554.49************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++v+r Migut.C00816.2.p 210 EKSQLMLGVRRV 221 677789999985 PP | |||||||
2 | Auxin_resp | 117.9 | 8.5e-39 | 246 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++++Fv++++k++k+++ +++s+GmRf m+fete+ss+rr++Gt++g+sdldp+rWpnSkWrsL+ Migut.C00816.2.p 246 AAHAAASRSPFTIFYNPRACPADFVIPFAKYQKSVYgTQLSIGMRFGMMFETEESSKRRYMGTITGMSDLDPLRWPNSKWRSLQ 329 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-46 | 107 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-40 | 113 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.80E-22 | 119 | 220 | No hit | No description |
SMART | SM01019 | 3.2E-24 | 120 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-22 | 120 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-33 | 246 | 329 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.8E-9 | 690 | 779 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.074 | 693 | 776 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.9E-9 | 706 | 771 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MILVIIMVGV KKQINSELWH ACGGPLVNLP QVGSLVYYFP QGHSEQVAVS TNRAATAQIP 60 NYPNLSPQLL CQVHNITLHA DKETDEIYAQ MSLQPVNTEK DVIPVPDFGL KPSKHPTEFF 120 CKTLTASDTS THGGFSVPRR AAEKLFPQLD YSMQPPTQEL VVRDLHENTW TFRHIYRGQP 180 KRHLLTTGWS MFVGAKRLRA GDSVLFIRDE KSQLMLGVRR VNRQLATLPS SVLSADSMHI 240 GILAAAAHAA ASRSPFTIFY NPRACPADFV IPFAKYQKSV YGTQLSIGMR FGMMFETEES 300 SKRRYMGTIT GMSDLDPLRW PNSKWRSLQV EWDEPGCGDK RNRVSPWEIE TPESLFVFPS 360 LTGNNFKRPF NSAFLGAQPE WESLVNRPFI RVPEYSPVDF QCPSIPNMWS DQLMKMLTSK 420 PNKLPIMQDA NDTAPPPPQE SKSVTVQSPD VFQQGQNRNF ANTSNNIPPP VKPATSNKIG 480 SQISSETSSE LIHPTNNGLQ SSGWVPQPTR FDPPVINQTQ QIDPFQVDPQ PLQYSGLIDF 540 ASYPPMSSPS GTFQNPGTFS MIKKSDGIGS LGQEMWDPPH FNNDVYSCLN LDCSNSGSTV 600 IDPSSVSSMV LEDFCPSKNP DFQSPSDYIN VGNYCSNQDV QSQITSASLA DSRNFSVQEY 660 ADNSGGASSS NVEFDEGKIL QQSSWQQVTP RFRTYTKIQK AGSVGRSIDV SSFKNYDELR 720 LEIERMFGLE GLLNDLGSGW KLVYVDFEND VLLVGDDPWE EFVGCVKCIR ILSPSEVKQM 780 GEEGMELLNS VVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 11 | 354 | 48 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00816.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182572 | 0.0 | AC182572.2 Erythranthe guttata clone MGBa-75A14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835742.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A191T8S8 | 0.0 | A0A191T8S8_SALMI; Auxin response factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00816.2.p |