PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00816.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 826aa MW: 91658.2 Da PI: 5.4353 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.4e-24 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++ Migut.C00816.1.p 152 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RD 241 99*********************999*****9555554.49************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++v+r Migut.C00816.1.p 242 EKSQLMLGVRRV 253 677789999985 PP | |||||||
2 | Auxin_resp | 117.8 | 9e-39 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++++Fv++++k++k+++ +++s+GmRf m+fete+ss+rr++Gt++g+sdldp+rWpnSkWrsL+ Migut.C00816.1.p 278 AAHAAASRSPFTIFYNPRACPADFVIPFAKYQKSVYgTQLSIGMRFGMMFETEESSKRRYMGTITGMSDLDPLRWPNSKWRSLQ 361 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-46 | 139 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-40 | 145 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.95E-22 | 151 | 252 | No hit | No description |
Pfam | PF02362 | 3.3E-22 | 152 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 152 | 254 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-24 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 278 | 361 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.1E-9 | 722 | 811 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.074 | 725 | 808 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.03E-9 | 738 | 803 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 826 aa Download sequence Send to blast |
MGSVEEKMKP GCLVSGGGGG HNLLEGMKLL KEMHDISNNN GVKKQINSEL WHACGGPLVN 60 LPQVGSLVYY FPQGHSEQVA VSTNRAATAQ IPNYPNLSPQ LLCQVHNITL HADKETDEIY 120 AQMSLQPVNT EKDVIPVPDF GLKPSKHPTE FFCKTLTASD TSTHGGFSVP RRAAEKLFPQ 180 LDYSMQPPTQ ELVVRDLHEN TWTFRHIYRG QPKRHLLTTG WSMFVGAKRL RAGDSVLFIR 240 DEKSQLMLGV RRVNRQLATL PSSVLSADSM HIGILAAAAH AAASRSPFTI FYNPRACPAD 300 FVIPFAKYQK SVYGTQLSIG MRFGMMFETE ESSKRRYMGT ITGMSDLDPL RWPNSKWRSL 360 QVEWDEPGCG DKRNRVSPWE IETPESLFVF PSLTGNNFKR PFNSAFLGAQ PEWESLVNRP 420 FIRVPEYSPV DFQCPSIPNM WSDQLMKMLT SKPNKLPIMQ DANDTAPPPP QESKSVTVQS 480 PDVFQQGQNR NFANTSNNIP PPVKPATSNK IGSQISSETS SELIHPTNNG LQSSGWVPQP 540 TRFDPPVINQ TQQIDPFQVD PQPLQYSGLI DFASYPPMSS PSGTFQNPGT FSMIKKSDGI 600 GSLGQEMWDP PHFNNDVYSC LNLDCSNSGS TVIDPSSVSS MVLEDFCPSK NPDFQSPSDY 660 INVGNYCSNQ DVQSQITSAS LADSRNFSVQ EYADNSGGAS SSNVEFDEGK ILQQSSWQQV 720 TPRFRTYTKI QKAGSVGRSI DVSSFKNYDE LRLEIERMFG LEGLLNDLGS GWKLVYVDFE 780 NDVLLVGDDP WEEFVGCVKC IRILSPSEVK QMGEEGMELL NSVVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 386 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00816.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182572 | 0.0 | AC182572.2 Erythranthe guttata clone MGBa-75A14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835742.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A191T8S8 | 0.0 | A0A191T8S8_SALMI; Auxin response factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00816.1.p |