PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.C00778.1.p | ||||||||
Common Name | LOC105963005, MIMGU_mgv1a018624mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23043.6 Da PI: 8.1959 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.6e-19 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r r++lg+f+t eAa a++aa++kl+g Migut.C00778.1.p 39 TYKGVRQRT-WGKWVAEIREP---N-RgSRVWLGTFDTSHEAAVAYDAAARKLYG 88 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.33E-20 | 38 | 98 | No hit | No description |
PROSITE profile | PS51032 | 22.326 | 39 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 39 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 39 | 97 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.2E-35 | 39 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 39 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MAAAAAAPAE EKKVRKLAQA SSRKGCMRGK GGPENAACTY KGVRQRTWGK WVAEIREPNR 60 GSRVWLGTFD TSHEAAVAYD AAARKLYGPD AKVNLPHLCD TAAATAAANN QTPALAQAAA 120 PAKVENQECY NYNYNYNYNP NTNLTSGTAN FNNGGGGGGE YVSASGILKK LNVSLPDVDD 180 SHLWAEAAKD TSFQMVHEQE HCGKDGNGLP FTWLY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 40 | 96 | 6 | 63 | ATERF1 |
3gcc_A | 2e-16 | 40 | 96 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.C00778.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842812.1 | 1e-159 | PREDICTED: dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q9LQZ2 | 5e-51 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A022QVY8 | 1e-158 | A0A022QVY8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-51 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.C00778.1.p |
Entrez Gene | 105963005 |
Publications ? help Back to Top | |||
---|---|---|---|
|