PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00778.1.p
Common NameLOC105963005, MIMGU_mgv1a018624mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 216aa    MW: 23043.6 Da    PI: 8.1959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00778.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-193988255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       ykGVr++  +g+WvAeIr+p   + r  r++lg+f+t  eAa a++aa++kl+g
  Migut.C00778.1.p 39 TYKGVRQRT-WGKWVAEIREP---N-RgSRVWLGTFDTSHEAAVAYDAAARKLYG 88
                      69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-203898No hitNo description
PROSITE profilePS5103222.3263996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-303997IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-213997IPR016177DNA-binding domain
SMARTSM003809.2E-3539102IPR001471AP2/ERF domain
PfamPF008471.5E-133988IPR001471AP2/ERF domain
PRINTSPR003674.7E-104051IPR001471AP2/ERF domain
PRINTSPR003674.7E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAAAAAAPAE EKKVRKLAQA SSRKGCMRGK GGPENAACTY KGVRQRTWGK WVAEIREPNR  60
GSRVWLGTFD TSHEAAVAYD AAARKLYGPD AKVNLPHLCD TAAATAAANN QTPALAQAAA  120
PAKVENQECY NYNYNYNYNP NTNLTSGTAN FNNGGGGGGE YVSASGILKK LNVSLPDVDD  180
SHLWAEAAKD TSFQMVHEQE HCGKDGNGLP FTWLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-164096663ATERF1
3gcc_A2e-164096663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00778.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842812.11e-159PREDICTED: dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ25e-51DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A022QVY81e-158A0A022QVY8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]