PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.C00762.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 364aa MW: 39632.7 Da PI: 8.5634

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.C00762.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.8e-05	250	288	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Migut.C00762.1.p 250 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 288 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.312	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-11	248	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-5	248	292	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.0E-9	252	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MPPDLSFYSW SNNEHTFVQG NNNLQNPRNN NIKEEDHLSS EHYYRNYVDI LSSTASPNNN 60 SSRNNNNTAT DEQSNDYLGT KLLLKSFSSG NLMTKNPISP PDFYYNNNGG GGGASINGRG 120 LFCSSQIFPS VNVSSLSSNQ NFTNPTSLDM NLEALDLLTS SRFSGEFGGA SSQNQNQNGG 180 FSYGFDHHHM QQQVHQTTTP FYSTSKVSSG SSNGAVEAKR SGSRIEPKAP NAPKKSRLEA 240 RASCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQSQ VETLSVPYMK 300 SSRNKSSRVL KVGVPMENEN EEQRRDLKSR GLCLVPLSCL SYMTDGDGGA AVWPPPHFGG 360 GAT*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MPPDLSFYSW SNNEHTFVQG NNNLQNPRNN NIKEEDHLSS EHYYRNYVDI LSSTASPNNN  60
SSRNNNNTAT DEQSNDYLGT KLLLKSFSSG NLMTKNPISP PDFYYNNNGG GGGASINGRG  120
LFCSSQIFPS VNVSSLSSNQ NFTNPTSLDM NLEALDLLTS SRFSGEFGGA SSQNQNQNGG  180
FSYGFDHHHM QQQVHQTTTP FYSTSKVSSG SSNGAVEAKR SGSRIEPKAP NAPKKSRLEA  240
RASCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQSQ VETLSVPYMK  300
SSRNKSSRVL KVGVPMENEN EEQRRDLKSR GLCLVPLSCL SYMTDGDGGA AVWPPPHFGG  360
GAT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.C00762.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842795.1	0.0	PREDICTED: transcription factor bHLH110
Swissprot	Q9SFZ3	2e-62	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A022R251	0.0	A0A022R251_ERYGU; Uncharacterized protein
STRING	Migut.C00762.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	8e-56	bHLH family protein

Link Out ? help Back to Top
Phytozome	Migut.C00762.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]