PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00610.1.p | ||||||||
Common Name | MIMGU_mgv1a013005mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 26251.1 Da PI: 8.7073 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.7e-18 | 40 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v ++G ++W++I++++ gR++k+c++rw + Migut.C00610.1.p 40 KGPWSAEEDKILTRLVDRYGARNWSLISKYIK-GRSGKSCRLRWCNQ 85 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 94 | 136 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ Migut.C00610.1.p 94 PFSAAEDAAILAAHGKYGNR-WATIARLLP-GRTDNAVKNHWNST 136 799*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.493 | 35 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.19E-30 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-16 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-18 | 40 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 41 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-14 | 42 | 84 | No hit | No description |
SMART | SM00717 | 2.0E-14 | 91 | 139 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.33 | 92 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-22 | 94 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-12 | 94 | 136 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDIFQRCSSG GSSTSSDSSS DSSSMSAGGG KNPTKSERIK GPWSAEEDKI LTRLVDRYGA 60 RNWSLISKYI KGRSGKSCRL RWCNQLSPNV EHRPFSAAED AAILAAHGKY GNRWATIARL 120 LPGRTDNAVK NHWNSTLKRR CQMRRSFEEP PKSDDGENTA AAAAGSGGVY PPPPPASVGG 180 GDCDGDEYDP MTALSLAPPG TGGGGAAAEK GLPAEFWDVM RNVIAREVRD YVTTSYPETS 240 SGFRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-40 | 39 | 141 | 6 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00610.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851522.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A022Q9M3 | 1e-117 | A0A022Q9M3_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-56 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00610.1.p |