PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.C00548.1.p | ||||||||
Common Name | LOC105971297, MIMGU_mgv1a012633mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 245aa MW: 27549.2 Da PI: 9.779 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 9.8e-21 | 88 | 147 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+ + r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Migut.C00548.1.p 88 TRWNPTQEQIGILEMLYGNgMRTPNANQIEQITAQLakygKIEGKNVFYWFQNHKARERQ 147 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.5 | 6.1e-38 | 88 | 149 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly +G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq Migut.C00548.1.p 88 TRWNPTQEQIGILEMLYGNGMRTPNANQIEQITAQLAKYGKIEGKNVFYWFQNHKARERQKQ 149 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.106 | 83 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-5 | 85 | 152 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.23E-11 | 85 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.29E-4 | 88 | 149 | No hit | No description |
Pfam | PF00046 | 1.8E-18 | 88 | 147 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 89 | 147 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MGIQAMKIHH LARALIWDHD PPSLTLGCKK RLRPLAPKLT TTAATTTAAT FDLKSFIRPE 60 SGPPKIESPP DYQKKELAQV EGAQPGGTRW NPTQEQIGIL EMLYGNGMRT PNANQIEQIT 120 AQLAKYGKIE GKNVFYWFQN HKARERQKQK RISLGLSRSR PRTPPSPFPA FSTPLLSSSS 180 SSTKSEGRHG ELFEDNPYKR KSRSWAFDLC LQEDNIRCTE EEEEGGWKDT TTLELFPLQP 240 EGRS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.C00548.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851597.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 7e-62 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A022Q9W8 | 0.0 | A0A022Q9W8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G46480.1 | 4e-57 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.C00548.1.p |
Entrez Gene | 105971297 |