PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00548.1.p
Common NameLOC105971297, MIMGU_mgv1a012633mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WOX
Protein Properties Length: 245aa    MW: 27549.2 Da    PI: 9.779
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00548.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.8e-2188147357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       +R+++t+eq+ +Le l+ +  r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Migut.C00548.1.p  88 TRWNPTQEQIGILEMLYGNgMRTPNANQIEQITAQLakygKIEGKNVFYWFQNHKARERQ 147
                       7*****************99**************************************97 PP

2Wus_type_Homeobox117.56.1e-3888149465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+ly +G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
   Migut.C00548.1.p  88 TRWNPTQEQIGILEMLYGNGMRTPNANQIEQITAQLAKYGKIEGKNVFYWFQNHKARERQKQ 149
                        8***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.10683148IPR001356Homeobox domain
SMARTSM003893.7E-585152IPR001356Homeobox domain
SuperFamilySSF466894.23E-1185153IPR009057Homeodomain-like
CDDcd000862.29E-488149No hitNo description
PfamPF000461.8E-1888147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-789147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGIQAMKIHH LARALIWDHD PPSLTLGCKK RLRPLAPKLT TTAATTTAAT FDLKSFIRPE  60
SGPPKIESPP DYQKKELAQV EGAQPGGTRW NPTQEQIGIL EMLYGNGMRT PNANQIEQIT  120
AQLAKYGKIE GKNVFYWFQN HKARERQKQK RISLGLSRSR PRTPPSPFPA FSTPLLSSSS  180
SSTKSEGRHG ELFEDNPYKR KSRSWAFDLC LQEDNIRCTE EEEEGGWKDT TTLELFPLQP  240
EGRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00548.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851597.10.0PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J97e-62WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A022Q9W80.0A0A022Q9W8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61862335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.14e-57WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]