PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00491.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 336aa    MW: 39308.5 Da    PI: 5.7999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.6e-1981127148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT +Ed +l+++v+q+G++ W+++a++m  gR +kqc++rw+++l
  Migut.C00491.1.p  81 KGQWTYQEDRKLIKLVNQYGNRKWSAVAEHMV-GRIGKQCRERWHNHL 127
                       799*****************************.*************97 PP
2Myb_DNA-binding56.66.1e-18135178247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + WT eE+ l+++a++++G++ W++Ia++++ gRt++ +k++w++ 
  Migut.C00491.1.p 135 LVWTDEEEMLIIKAHERFGNR-WSAIANYVP-GRTENAIKNHWNSI 178
                       57*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-2980175IPR009057Homeodomain-like
SMARTSM007172.8E-1580129IPR001005SANT/Myb domain
PROSITE profilePS5129424.4480131IPR017930Myb domain
PfamPF002491.0E-1781127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2582135IPR009057Homeodomain-like
CDDcd001676.84E-1384127No hitNo description
PROSITE profilePS5129419.896132183IPR017930Myb domain
SMARTSM007172.7E-16133181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-20136182IPR009057Homeodomain-like
PfamPF002491.2E-16136178IPR001005SANT/Myb domain
CDDcd001673.97E-12137179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLKNRKVNAG DRRKNQEEEK TPFFCSDEFF DINHINNQYY QNNLINSNNS NYVVISDDDE  60
SMDGGDESTE KSTCSPEYWV KGQWTYQEDR KLIKLVNQYG NRKWSAVAEH MVGRIGKQCR  120
ERWHNHLRPD IKKSLVWTDE EEMLIIKAHE RFGNRWSAIA NYVPGRTENA IKNHWNSIKR  180
KQISTRKISK PEKLKGVITS TILEDYIKNK YFNNESYSSS TTNNNTNPNN AITNPNNNYD  240
YHHGIYDDIY YLIHDTIDEE IKFMRTLFPN NDNNLKNQTV GLAGHDLVEI SSKLKKLLID  300
DDYGDISMEE ADIYFSSYMF DESDHGNIIG SNMEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-43801833105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00491.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851557.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A022QG851e-179A0A022QG85_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.13e-47myb domain protein 64