PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00452.1.p
Common NameMIMGU_mgv1a026858mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 651aa    MW: 71717.6 Da    PI: 7.6685
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00452.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-16339398155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Migut.C00452.1.p 339 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 398
                       789******************988886678446*************************98 PP
2AP247.25.5e-15441492155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Migut.C00452.1.p 441 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 492
                       57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-16339407IPR016177DNA-binding domain
CDDcd000182.15E-21339406No hitNo description
PfamPF008472.1E-12340398IPR001471AP2/ERF domain
PROSITE profilePS5103218.782340406IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15340407IPR001471AP2/ERF domain
SMARTSM003805.5E-29340412IPR001471AP2/ERF domain
PRINTSPR003676.2E-6341352IPR001471AP2/ERF domain
PfamPF008478.3E-10441492IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18441502IPR016177DNA-binding domain
CDDcd000185.57E-26441502No hitNo description
PROSITE profilePS5103219.032442500IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-18442500IPR001471AP2/ERF domain
SMARTSM003808.1E-34442506IPR001471AP2/ERF domain
PRINTSPR003676.2E-6482502IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MNCEMKSAAM MNSNNDGIGS SSSINNNNNN NNGGGGGDDD ISNWLGFSLS PHLKMESNTT  60
STTFYNSSSS SSSQHIHFNG GGAAQTSTAH FLSPLSVVMP LKSDGSLCII DAPLSTSHSP  120
QGVRMGGSCS SSPKLEDFLG GTTMATHPYG IIHPNPRVYN NNHNQDSFRQ QHYYYSSSDL  180
NYNNNNNNNN NNDVVYQTTN DEPPTAMIMP NDNGNEIPCF KTWVYDNHDH HHAFQHHHNH  240
QLVHYNNNNT AVSENRGTAT TMGAGCGGDL HSLTLSMSPG SQTSSSSCVN LTADTTHCVS  300
IVQQNNIINK KRGSSEKLMA QKQTVHHRKS IDTFGQRTSQ FRGVTRHRWT GRYEAHLWDN  360
SCKKEGQTRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLESY HQELEEMKNM  420
SRQEHVAHLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA  480
EAYDIAAIKF RGANAVTNFD ISRYHVDKIM SSNTLPTADV ARRIKEADPT IVHQVDENNN  540
DVGSGSSSCD WKMVPHGIIE NYHQNINNNT NNPFSGGLHD LMIGMGSSQT KNNAMGAPNL  600
SNASSLVTSL SSSREGSPDK YTSWISSDKL KPVLLTNKAH LPVFANWNDA *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00452.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841240.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-135CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A022R1P90.0A0A022R1P9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-122AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]