PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00438.1.p
Common NameLOC105961510, MIMGU_mgv1a018634mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 345aa    MW: 38656.6 Da    PI: 8.049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00438.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+ ++ ++G+g +W + + ++g++R++k+c++rw++yl
  Migut.C00438.1.p 14 KGPWSPEEDSKLKSYIDKHGTGgNWISLPLKIGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding35.71.9e-1169111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g ++++Ed ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Migut.C00438.1.p  69 GGFSEDEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.473962IPR017930Myb domain
SuperFamilySSF466898.2E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002499.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-231569IPR009057Homeodomain-like
CDDcd001676.76E-91662No hitNo description
PROSITE profilePS5129420.98863117IPR017930Myb domain
SMARTSM007172.0E-1067115IPR001005SANT/Myb domain
PfamPF002494.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2270117IPR009057Homeodomain-like
CDDcd001671.30E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKSYID KHGTGGNWIS LPLKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEDEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKDKLHDAR RRSTARGGKH NYHSGQTPVA AYEPPPPAAQ LPPHDVLLPP IPYSDQEPRF  180
NNEHSNIRKL LVKLGGRFSN GSNQNNVIDD GEELKFHYYP AIDESLLIPP VNYDYSIPNS  240
SSQIPLLDST CQDVPCLPNN EPLFDMSTLL NGPGFSLPAE IERVVYENQD KLQGLEFFYD  300
DIVNGTNYTT ASMEWGEMNS LVFGAATSNS FGIDQKTTRY PGTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00438.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841193.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A022R5U40.0A0A022R5U4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-74myb domain protein 84