PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00339.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 1050aa    MW: 115496 Da    PI: 8.1228
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00339.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40167244178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqv++C +dls ak+yhrrhkvCe+hska ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Migut.C00339.1.p 167 VCQVDNCVKDLSAAKDYHRRHKVCEFHSKAGNALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 244
                       6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.6E-33162229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.419165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-37166246IPR004333Transcription factor, SBP-box
PfamPF031104.6E-29168241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MEDLGTAQVV SPTVIHQSMV GRFHDSYNPT SKKRGPPFHS SNSVHNKSPS DNWNPKSWNW  60
DSARFVAKPV QCDNGFDVGG GAPQIQIQTS LPARKEVLNG APIPRKPDRT GGDDENLRLK  120
LGGENGGGVN NNNTNNTNNN NNNTVEMQLR PSKRVRSGSP GGANYPVCQV DNCVKDLSAA  180
KDYHRRHKVC EFHSKAGNAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR  240
KTQPEDTVNA PQSLVPCARD NTVNDSDIVN LLAVLSRAQG NTEERSGKIP AIPDKDQLIQ  300
ILSKIHSLPA QTNMPSKPNG TVLNNVPSEN QNQINGKNNS STSTKNLLVA LSAHTSSQGS  360
DSEKSKSPCV DNNRDTIIVF PTVGGERSST SYHSPMEEVQ ETSPCVPLEL FSPSPEDYRS  420
MKLPSDGNFL SSGSSNPSVD RTPLSSPPVV YDLFPMRTMK DDCLSNNVGE IAYVKATMSN  480
GCSTSLQLFG SSKLATENGS IQSSPYRAGY ASSGSDHSPS SLNSDAQDRT GRIIFKLFDK  540
DPSHLPGSLQ TQIYSWLSNS PSEMESYIRP GCIVLSLYLS MPSFTWDQID ENLLNYVKSL  600
VKDVDIDFWG NGRFLVHTDR QRVSHKEGKI RLCKSWRTWN TPELIAVSPL AVVGGQETSL  660
LLRGRSLTAP GTMIHCTHAT GYNINEVPLS QDTPFDEVTL ACFKVNGTLG RCFIEVENNF  720
KGTSFPVIIA NNTICQELRL LEPEINGTAG VSDGIYREKA LGFLDELGWL FQRKQNSFLF  780
GIPDYRINRF KFLLIFSVEH DFCALVKTLL DILLELNLGR KGLLEKESLE LLSEIHLLNR  840
AVKRRCLSMV DLLVRYSVID SSEASGKFFF TPDMAGPGGI TPLHLAACTP SSDDMVDALT  900
SDPQKIGLQS WNTALDANGL SPYAYALMTN NHSYNALVAR KIADKENGQV SLSIENEIVQ  960
SQSEVDKRDK AISTFNQTQK SCSKCALAVR VHNSKKKFSG SKGLLQRPYI HSMLVVAAVC  1020
VCVCVFLRGH PYVGCVSPFA WENLGYGAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-33158241184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1839844RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00339.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832811.10.0PREDICTED: squamosa promoter-binding-like protein 14
RefseqXP_012832812.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A022RMB00.0A0A022RMB0_ERYGU; Uncharacterized protein
STRINGMigut.C00339.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128871219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]