PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00273.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 98aa MW: 11206.1 Da PI: 10.0138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00032 | 45 | 65 | 35 | 54 |
TS-.STCHHHHHHHHHHHHHH CS HLH 35 skK.lsKaeiLekAveYIksL 54 + K s a +L+k+++YI+sL Migut.C00273.1.p 45 KYKgRSAAKVLQKTCNYIRSL 65 556678999**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.99E-5 | 47 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-5 | 49 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MTILTEEKRR VLGSGNFVIY RVDQMALESK LTKIEGKGCI RKLYKYKGRS AAKVLQKTCN 60 YIRSLHREVD DLSERLSELL ENTDTTQAAL IRNLLMQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00273.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182577 | 2e-60 | AC182577.2 Erythranthe guttata clone MGBa-93F4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852960.1 | 2e-26 | PREDICTED: transcription factor PRE3 | ||||
TrEMBL | A0A022Q6V6 | 5e-25 | A0A022Q6V6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.C00273.1.p | 2e-64 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74500.1 | 1e-12 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00273.1.p |