PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01894.1.p | ||||||||
Common Name | MIMGU_mgv1a010232mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Dof | ||||||||
Protein Properties | Length: 319aa MW: 34904.3 Da PI: 8.2203 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.3 | 4e-39 | 46 | 106 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++ ++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk s Migut.B01894.1.p 46 KDQVTNCPRCQSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKPS 106 78999*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-26 | 39 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 47 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.64 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MDSAHHLQWT QEFGVAKSMA EGGGSGACTM ARPPQVVERK LVRPQKDQVT NCPRCQSTNT 60 KFCYYNNYSL TQPRYFCKTC RRYWTEGGTL RNVPVGGGSR KNKKPSSTTS SCNNNSPSSS 120 SMATMPPQLR IPDLNPPSNI SLFSSQNPKI HDHDQGHDLN LGYNQQDYHL HGNNNNNNNI 180 SQFLDFPKID SSSSSSALNF LRSGINNNGV RGFNSFIPMA PGTLEANSLF ASSGFPFQEC 240 KQQSSLAFSN LYGNPNNQDQ TAQENINGSL MFTLGSTTIK QHSSSTSTEA DHDQEKGHDQ 300 INNPNGFWNG MLGGGGSW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01894.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843875.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5 isoform X2 | ||||
TrEMBL | A0A022R0E0 | 0.0 | A0A022R0E0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01894.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.2 | 6e-47 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01894.1.p |