PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01832.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34119.8 Da PI: 5.0071 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 110 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp ++r r++lg+++taeeAa +++a+ ++g Migut.B01832.1.p 110 KKFRGVRQRP-WGRWAAEIRDP---NRRGRVWLGTYDTAEEAAMVYDKAAIGIRG 160 59********.**********9...3359*********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-30 | 110 | 167 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 111 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 111 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-34 | 111 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-13 | 111 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 111 | 167 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.7E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MNPPNMQEKP FKYSVSTTVT TKLVPSPPSR GGGALGTRTP RVVRISVTDG DATDSSGDEC 60 GDMRFRHVRK HVQEIRVEAE SVYYANNGMQ KKKRAAPPRG PPPDEKGKAK KFRGVRQRPW 120 GRWAAEIRDP NRRGRVWLGT YDTAEEAAMV YDKAAIGIRG PDAMTNFIQP PRIATAEAAA 180 AVTSVSGDDS AAKEEACENP SSSPTSVLRF TTNGGANMSE SEFKNNNNND VENRTARNEF 240 LIGDCLPLDE SFLNSLSDFQ PHAPLIFDFP EQVLGDGSNF HLGEDIDSFK SDLNDFFDFN 300 DFDDQFLFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 108 | 177 | 2 | 70 | ATERF1 |
3gcc_A | 2e-20 | 108 | 177 | 2 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01832.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844004.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A022QXX1 | 0.0 | A0A022QXX1_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-39 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01832.1.p |