PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B01702.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 805aa MW: 87294.9 Da PI: 6.2881

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B01702.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.6	2.8e-20	158	213	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k Migut.B01702.1.p 158 KKRYHRHTPLQIQELESLFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMK 213 688999***********************************************999 PP
2	START	21.6	4.4e-08	356	434	1	69
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddk 69 ela++a++elvk+a+ +ep+W + e++n+de ++ ++s + +ea+r++g+v+ + lve+l+d++ Migut.B01702.1.p 356 ELALAAMDELVKLAQTDEPLWIRGFeggkEILNRDEFSRTCAPSIIgmkpngFVTEASRETGMVIINGLALVETLMDSM 434 5899*****************9999999*******999989****************************98 PP
3	START	124.3	1.5e-39	434	543	94	206
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 m+a+lq+lsplvp R++ f+R+++q+ +g+w++vd S+++ pp + +++lpSg+++++++ng+skvtwveh++++++++h+l+r+l+ Migut.B01702.1.p 434 MNAALQVLSPLVPvREVNFLRFCKQHAEGVWAVVDLSIENLGGPP----FPTCRRLPSGCVVQDMPNGYSKVTWVEHIEYDESVIHQLYRPLI 522 789***************************************9....666778********************************** PP HHHHHHHHHHHHHHTXXXXXX CS START 186 ksglaegaktwvatlqrqcek 206 + g+ +ga +wvatlqrqce+ Migut.B01702.1.p 523 SAGMGFGAHRWVATLQRQCEC 543 *****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-20	145	215	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-21	153	223	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	155	215	IPR001356	Homeobox domain
SMART	SM00389	2.2E-18	156	219	IPR001356	Homeobox domain
CDD	cd00086	1.52E-18	157	215	No hit	No description
Pfam	PF00046	7.6E-18	158	213	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	190	213	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	28.475	347	546	IPR002913	START domain
SuperFamily	SSF55961	3.25E-25	349	543	No hit	No description
CDD	cd08875	3.26E-89	351	542	No hit	No description
SMART	SM00234	1.1E-21	356	543	IPR002913	START domain
Pfam	PF01852	5.5E-34	434	543	IPR002913	START domain
SuperFamily	SSF55961	1.05E-23	571	796	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009827	Biological Process	plant-type cell wall modification
GO:0042335	Biological Process	cuticle development
GO:0043481	Biological Process	anthocyanin accumulation in tissues in response to UV light
GO:0048765	Biological Process	root hair cell differentiation
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MNFGDFLDSN SCGGGGGGGG GGGGSRIVAD ITYTNNNNHN NNNASIVTTI PAGSNNIIMP 60 TGAISHPRLL PHSSLSTTTT TTKPMFLSPG LSLALQTNME GQGEIGRMVE KSEIMSNNNN 120 VGGRRSREEE HDSRSGSDNF DGGASADELD ASDKPPRKKR YHRHTPLQIQ ELESLFKECP 180 HPDEKQRLEL SRRLSLETRQ VKFWFQNRRT QMKTQLERHE NSILRQDNDK LRAENMSIRE 240 AMRNPMCTNC GGPALIGEIS LEEQHLRIEN ARLKDELERV CSLAGKFMGR PVSSMGHPMP 300 NSSLELGVGG INVISSDFGI SSPIPMLPPH KSITMSNVAT NNNNNDRSFE RSMYLELALA 360 AMDELVKLAQ TDEPLWIRGF EGGKEILNRD EFSRTCAPSI IGMKPNGFVT EASRETGMVI 420 INGLALVETL MDSMNAALQV LSPLVPVREV NFLRFCKQHA EGVWAVVDLS IENLGGPPFP 480 TCRRLPSGCV VQDMPNGYSK VTWVEHIEYD ESVIHQLYRP LISAGMGFGA HRWVATLQRQ 540 CECLAILMSS TSPATDHHTA ITAGGRRSML KLAQRMTNNF CAGVCASSVH KWNKLRTENV 600 DDDVQVMTRK SVDDPGEPPG IVLSAATSVW LPVTPQRVFD FLRDERLRSE WDILSNGGPM 660 QEMAHIAKGQ DHGNCVSLLR AGAVNSSQSS MLILQETCID AAGALVVYAP VDIPAMHLVM 720 NGGDSAYVAL LPSGFSIMPD GTGGGGPVSG DGSGGNGGSL LTVGFQILVN SLPTAKLTVE 780 SVETVNNLIS CTVQKIRAAL HCDN*

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MNFGDFLDSN SCGGGGGGGG GGGGSRIVAD ITYTNNNNHN NNNASIVTTI PAGSNNIIMP  60
TGAISHPRLL PHSSLSTTTT TTKPMFLSPG LSLALQTNME GQGEIGRMVE KSEIMSNNNN  120
VGGRRSREEE HDSRSGSDNF DGGASADELD ASDKPPRKKR YHRHTPLQIQ ELESLFKECP  180
HPDEKQRLEL SRRLSLETRQ VKFWFQNRRT QMKTQLERHE NSILRQDNDK LRAENMSIRE  240
AMRNPMCTNC GGPALIGEIS LEEQHLRIEN ARLKDELERV CSLAGKFMGR PVSSMGHPMP  300
NSSLELGVGG INVISSDFGI SSPIPMLPPH KSITMSNVAT NNNNNDRSFE RSMYLELALA  360
AMDELVKLAQ TDEPLWIRGF EGGKEILNRD EFSRTCAPSI IGMKPNGFVT EASRETGMVI  420
INGLALVETL MDSMNAALQV LSPLVPVREV NFLRFCKQHA EGVWAVVDLS IENLGGPPFP  480
TCRRLPSGCV VQDMPNGYSK VTWVEHIEYD ESVIHQLYRP LISAGMGFGA HRWVATLQRQ  540
CECLAILMSS TSPATDHHTA ITAGGRRSML KLAQRMTNNF CAGVCASSVH KWNKLRTENV  600
DDDVQVMTRK SVDDPGEPPG IVLSAATSVW LPVTPQRVFD FLRDERLRSE WDILSNGGPM  660
QEMAHIAKGQ DHGNCVSLLR AGAVNSSQSS MLILQETCID AAGALVVYAP VDIPAMHLVM  720
NGGDSAYVAL LPSGFSIMPD GTGGGGPVSG DGSGGNGGSL LTVGFQILVN SLPTAKLTVE  780
SVETVNNLIS CTVQKIRAAL HCDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00421	DAP	Transfer from AT4G00730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B01702.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012843673.1	0.0	PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ANTHOCYANINLESS 2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2G9HWV6	0.0	A0A2G9HWV6_9LAMI; Transcription factor DLX

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.B01702.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]