PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01642.1.p | ||||||||
Common Name | MIMGU_mgv1a022726mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 125aa MW: 12512.3 Da PI: 8.8303 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.7 | 7.9e-38 | 34 | 122 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGas+v+kll ++p+++r da+ +++yeA+ar+rdP+yG+v++i++lqqq+ Migut.B01642.1.p 34 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASHVSKLLLHIPPHKRLDAVVTICYEAQARLRDPIYGCVAHIFALQQQVY 122 7***********************9989***********************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.234 | 33 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.5E-37 | 34 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MMSAANVASS SAGGGGGSGG GSGGGGGGGG GGGPCGACKF LRRKCVAGCI FAPYFDSEQG 60 AAHFAAVHKV FGASHVSKLL LHIPPHKRLD AVVTICYEAQ ARLRDPIYGC VAHIFALQQQ 120 VYYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 30 | 124 | 7 | 100 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 30 | 124 | 7 | 100 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01642.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843934.1 | 1e-80 | PREDICTED: LOB domain-containing protein 18-like | ||||
Swissprot | Q9SLB7 | 5e-52 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A022QTK2 | 7e-79 | A0A022QTK2_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B01642.1.p | 5e-83 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 9e-53 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01642.1.p |