PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01615.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24969.7 Da PI: 9.08 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.5 | 1.7e-13 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i ++ r++t+ +R+ ++K A+ELSvLC++e+++++ Migut.B01615.1.p 11 IPSEKTRKITLRRRLDSLFKRANELSVLCGIEILIVVHN 49 678899****************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-7 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.876 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-16 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-12 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MPRKNTKYVQ IPSEKTRKIT LRRRLDSLFK RANELSVLCG IEILIVVHNR NEGHSTLWPT 60 QDKVVDGITK FLNFPERERI KKMVTQEKFL TDKVQDLAGK LLKLQKKNDE TEMGLLMGQL 120 IETGTTHDAL DARRVNGLYR LVEEKLEKLR NRREELYAMR EYNCFGGTVS GVNNNNNNVD 180 LLNETEMEIR ANEVTNSFVE GNRGELLGEV WPMMF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01615.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843584.1 | 1e-157 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A022QWM1 | 1e-119 | A0A022QWM1_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31640.1 | 2e-16 | AGAMOUS-like 92 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01615.1.p |